Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23410 | 3' | -61.1 | NC_005259.1 | + | 40940 | 0.69 | 0.342637 |
Target: 5'- uGCGGCUGa-GGUauGCAGaGUGauccUUGGCGCu -3' miRNA: 3'- -CGCCGACagCCG--CGUC-CAC----AGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 39760 | 0.69 | 0.342637 |
Target: 5'- aGCGGCaGcagCGGCagccugcuGCuGGUGaUCGGUGCg -3' miRNA: 3'- -CGCCGaCa--GCCG--------CGuCCAC-AGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 58587 | 0.69 | 0.31549 |
Target: 5'- cGCGGCUGccgggccggaucuuuUCGaGCGCcuGGcugaUGUCGGCGa -3' miRNA: 3'- -CGCCGAC---------------AGC-CGCGu-CC----ACAGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 49065 | 0.7 | 0.303247 |
Target: 5'- uCGGCgGUUGGCGCaagggaucgcucgaGGGUGUCauGGcCGCc -3' miRNA: 3'- cGCCGaCAGCCGCG--------------UCCACAG--CC-GCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 57022 | 0.7 | 0.284559 |
Target: 5'- cGCGGC--UCGGCGC-GGUGg-GGuCGCa -3' miRNA: 3'- -CGCCGacAGCCGCGuCCACagCC-GCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 58941 | 0.7 | 0.277872 |
Target: 5'- cGCGGUggcagcGUCGGCcuuggccaGCAGGUcgggcagcucGUCGGCGa -3' miRNA: 3'- -CGCCGa-----CAGCCG--------CGUCCA----------CAGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 27145 | 0.7 | 0.275233 |
Target: 5'- gGCGGCUG-CGGUGUuGGggccaacgaugccGUCGGCGa -3' miRNA: 3'- -CGCCGACaGCCGCGuCCa------------CAGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 27972 | 0.7 | 0.271311 |
Target: 5'- cGUGGCcaaUGUuccucccuugggUGGUGCGGGUGcCGGgGCg -3' miRNA: 3'- -CGCCG---ACA------------GCCGCGUCCACaGCCgCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 27392 | 0.72 | 0.228836 |
Target: 5'- gGCGGCggUGUCGGCaGCGGcGgcagcUCGGUGCc -3' miRNA: 3'- -CGCCG--ACAGCCG-CGUC-Cac---AGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 26810 | 0.73 | 0.192119 |
Target: 5'- cCGGUUGgccgguacCGGCGguGGUGcCGGgGCg -3' miRNA: 3'- cGCCGACa-------GCCGCguCCACaGCCgCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 19839 | 0.73 | 0.187316 |
Target: 5'- cGCGGCUGcugCcGCGCucGGUGU-GGCGCu -3' miRNA: 3'- -CGCCGACa--GcCGCGu-CCACAgCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 34013 | 0.74 | 0.156577 |
Target: 5'- cCGGCUGUaucCGGCcucgGCGGcGUgcGUCGGCGCg -3' miRNA: 3'- cGCCGACA---GCCG----CGUC-CA--CAGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 52382 | 0.74 | 0.156577 |
Target: 5'- aGCGGCUGcgcagccugccUCGG-GCcaucgAGGUGUgGGCGCu -3' miRNA: 3'- -CGCCGAC-----------AGCCgCG-----UCCACAgCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 53529 | 0.74 | 0.156577 |
Target: 5'- aGCGGCacggGcUCGGUGCccGGUGUCGGCu- -3' miRNA: 3'- -CGCCGa---C-AGCCGCGu-CCACAGCCGcg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 47176 | 0.79 | 0.064993 |
Target: 5'- aGCGGCgaagGUCGGCGguGccGUCGGCGa -3' miRNA: 3'- -CGCCGa---CAGCCGCguCcaCAGCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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