miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23410 5' -52.3 NC_005259.1 + 20409 0.66 0.918945
Target:  5'- aGGGCAucgaggucuacccggUCACCgacgccacaGUGCUCcacGACGAGc -3'
miRNA:   3'- -CCCGU---------------AGUGGaug------CACGAG---UUGCUCu -5'
23410 5' -52.3 NC_005259.1 + 919 0.66 0.916479
Target:  5'- cGGCgAUCACCUGC-UGCUgcGCGAc- -3'
miRNA:   3'- cCCG-UAGUGGAUGcACGAguUGCUcu -5'
23410 5' -52.3 NC_005259.1 + 15853 0.66 0.916479
Target:  5'- cGGGCAUCGCCaagcuCGccGCUCucauCGGGc -3'
miRNA:   3'- -CCCGUAGUGGau---GCa-CGAGuu--GCUCu -5'
23410 5' -52.3 NC_005259.1 + 37729 0.66 0.916479
Target:  5'- aGGCAcCGCCgccgACGagcUGCUCGAUGAc- -3'
miRNA:   3'- cCCGUaGUGGa---UGC---ACGAGUUGCUcu -5'
23410 5' -52.3 NC_005259.1 + 53680 0.66 0.910122
Target:  5'- cGGGCAUCGCgaUG-GUGCgaccggUCAACGuGAa -3'
miRNA:   3'- -CCCGUAGUGg-AUgCACG------AGUUGCuCU- -5'
23410 5' -52.3 NC_005259.1 + 22776 0.66 0.910122
Target:  5'- aGGCgcugGUCACUgugcAgGUGCUCAcCGAGGg -3'
miRNA:   3'- cCCG----UAGUGGa---UgCACGAGUuGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 16575 0.66 0.908161
Target:  5'- cGGGCAgaucgccgaggacaUCGCCcGCGaggccaucggacUGUUCAACGGGc -3'
miRNA:   3'- -CCCGU--------------AGUGGaUGC------------ACGAGUUGCUCu -5'
23410 5' -52.3 NC_005259.1 + 25530 0.66 0.90349
Target:  5'- uGGCAUCGCgUGgGUGCUgGgACG-GAu -3'
miRNA:   3'- cCCGUAGUGgAUgCACGAgU-UGCuCU- -5'
23410 5' -52.3 NC_005259.1 + 50340 0.66 0.90349
Target:  5'- cGGCccuuguccucgGUCACgaUGucggUGUGCUCGGCGAGAa -3'
miRNA:   3'- cCCG-----------UAGUGg-AU----GCACGAGUUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 37834 0.66 0.896587
Target:  5'- cGGGCcaCACCUGCGUcgaGC-CGAUGuAGAc -3'
miRNA:   3'- -CCCGuaGUGGAUGCA---CGaGUUGC-UCU- -5'
23410 5' -52.3 NC_005259.1 + 13618 0.66 0.889416
Target:  5'- cGGCAaccaCAUCUGCGggccGCUCAACGucGAc -3'
miRNA:   3'- cCCGUa---GUGGAUGCa---CGAGUUGCu-CU- -5'
23410 5' -52.3 NC_005259.1 + 40675 0.66 0.889416
Target:  5'- -cGCGagCGCCUugGUGCUCAcCGGc- -3'
miRNA:   3'- ccCGUa-GUGGAugCACGAGUuGCUcu -5'
23410 5' -52.3 NC_005259.1 + 66023 0.67 0.881225
Target:  5'- gGGGCcgCACgUguugcgcGCGaGCUCGACGuAGAc -3'
miRNA:   3'- -CCCGuaGUGgA-------UGCaCGAGUUGC-UCU- -5'
23410 5' -52.3 NC_005259.1 + 4240 0.67 0.849731
Target:  5'- aGGCccCGCCcACGUGCcUCGacuGCGAGGa -3'
miRNA:   3'- cCCGuaGUGGaUGCACG-AGU---UGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 11041 0.68 0.841076
Target:  5'- cGGGUgGUCACCgcaugACGUgccgaucgGCUCAGCGuGGAa -3'
miRNA:   3'- -CCCG-UAGUGGa----UGCA--------CGAGUUGC-UCU- -5'
23410 5' -52.3 NC_005259.1 + 44121 0.68 0.823112
Target:  5'- -cGCAUCGCCUGuagcUGUGCguugAGCGAGGu -3'
miRNA:   3'- ccCGUAGUGGAU----GCACGag--UUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 142 0.68 0.804341
Target:  5'- cGGCAagACCUACuggGCUCGcccgGCGGGGu -3'
miRNA:   3'- cCCGUagUGGAUGca-CGAGU----UGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 8361 0.69 0.794679
Target:  5'- cGGUAUCGCUcgGCGgcggccucgGCaUCGGCGAGAg -3'
miRNA:   3'- cCCGUAGUGGa-UGCa--------CG-AGUUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 50511 0.69 0.794679
Target:  5'- uGGGCGgugcgcugCACCUcgACGcGCUCGccucggGCGAGGa -3'
miRNA:   3'- -CCCGUa-------GUGGA--UGCaCGAGU------UGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 34914 0.69 0.784846
Target:  5'- cGGGCAUCACaCUGC-UGcCUCGggcGCGAa- -3'
miRNA:   3'- -CCCGUAGUG-GAUGcAC-GAGU---UGCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.