Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23410 | 5' | -52.3 | NC_005259.1 | + | 20409 | 0.66 | 0.918945 |
Target: 5'- aGGGCAucgaggucuacccggUCACCgacgccacaGUGCUCcacGACGAGc -3' miRNA: 3'- -CCCGU---------------AGUGGaug------CACGAG---UUGCUCu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 919 | 0.66 | 0.916479 |
Target: 5'- cGGCgAUCACCUGC-UGCUgcGCGAc- -3' miRNA: 3'- cCCG-UAGUGGAUGcACGAguUGCUcu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 15853 | 0.66 | 0.916479 |
Target: 5'- cGGGCAUCGCCaagcuCGccGCUCucauCGGGc -3' miRNA: 3'- -CCCGUAGUGGau---GCa-CGAGuu--GCUCu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 37729 | 0.66 | 0.916479 |
Target: 5'- aGGCAcCGCCgccgACGagcUGCUCGAUGAc- -3' miRNA: 3'- cCCGUaGUGGa---UGC---ACGAGUUGCUcu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 22776 | 0.66 | 0.910122 |
Target: 5'- aGGCgcugGUCACUgugcAgGUGCUCAcCGAGGg -3' miRNA: 3'- cCCG----UAGUGGa---UgCACGAGUuGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 53680 | 0.66 | 0.910122 |
Target: 5'- cGGGCAUCGCgaUG-GUGCgaccggUCAACGuGAa -3' miRNA: 3'- -CCCGUAGUGg-AUgCACG------AGUUGCuCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 16575 | 0.66 | 0.908161 |
Target: 5'- cGGGCAgaucgccgaggacaUCGCCcGCGaggccaucggacUGUUCAACGGGc -3' miRNA: 3'- -CCCGU--------------AGUGGaUGC------------ACGAGUUGCUCu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 25530 | 0.66 | 0.90349 |
Target: 5'- uGGCAUCGCgUGgGUGCUgGgACG-GAu -3' miRNA: 3'- cCCGUAGUGgAUgCACGAgU-UGCuCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 50340 | 0.66 | 0.90349 |
Target: 5'- cGGCccuuguccucgGUCACgaUGucggUGUGCUCGGCGAGAa -3' miRNA: 3'- cCCG-----------UAGUGg-AU----GCACGAGUUGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 37834 | 0.66 | 0.896587 |
Target: 5'- cGGGCcaCACCUGCGUcgaGC-CGAUGuAGAc -3' miRNA: 3'- -CCCGuaGUGGAUGCA---CGaGUUGC-UCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 40675 | 0.66 | 0.889416 |
Target: 5'- -cGCGagCGCCUugGUGCUCAcCGGc- -3' miRNA: 3'- ccCGUa-GUGGAugCACGAGUuGCUcu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 13618 | 0.66 | 0.889416 |
Target: 5'- cGGCAaccaCAUCUGCGggccGCUCAACGucGAc -3' miRNA: 3'- cCCGUa---GUGGAUGCa---CGAGUUGCu-CU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 66023 | 0.67 | 0.881225 |
Target: 5'- gGGGCcgCACgUguugcgcGCGaGCUCGACGuAGAc -3' miRNA: 3'- -CCCGuaGUGgA-------UGCaCGAGUUGC-UCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 4240 | 0.67 | 0.849731 |
Target: 5'- aGGCccCGCCcACGUGCcUCGacuGCGAGGa -3' miRNA: 3'- cCCGuaGUGGaUGCACG-AGU---UGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 11041 | 0.68 | 0.841076 |
Target: 5'- cGGGUgGUCACCgcaugACGUgccgaucgGCUCAGCGuGGAa -3' miRNA: 3'- -CCCG-UAGUGGa----UGCA--------CGAGUUGC-UCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 44121 | 0.68 | 0.823112 |
Target: 5'- -cGCAUCGCCUGuagcUGUGCguugAGCGAGGu -3' miRNA: 3'- ccCGUAGUGGAU----GCACGag--UUGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 142 | 0.68 | 0.804341 |
Target: 5'- cGGCAagACCUACuggGCUCGcccgGCGGGGu -3' miRNA: 3'- cCCGUagUGGAUGca-CGAGU----UGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 8361 | 0.69 | 0.794679 |
Target: 5'- cGGUAUCGCUcgGCGgcggccucgGCaUCGGCGAGAg -3' miRNA: 3'- cCCGUAGUGGa-UGCa--------CG-AGUUGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 50511 | 0.69 | 0.794679 |
Target: 5'- uGGGCGgugcgcugCACCUcgACGcGCUCGccucggGCGAGGa -3' miRNA: 3'- -CCCGUa-------GUGGA--UGCaCGAGU------UGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 34914 | 0.69 | 0.784846 |
Target: 5'- cGGGCAUCACaCUGC-UGcCUCGggcGCGAa- -3' miRNA: 3'- -CCCGUAGUG-GAUGcAC-GAGU---UGCUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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