miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 11662 0.7 0.186055
Target:  5'- cGUGGCGGCCacaucgagccaCCGCCUcacuccaaAUCGCUGAUcucaaGCa -3'
miRNA:   3'- -CGCCGCCGG-----------GGCGGG--------UAGCGGCUG-----CG- -5'
23417 5' -65 NC_005259.1 + 67980 0.7 0.186055
Target:  5'- aGCGGCguGGCCaCCGCCgCGagCGUCGACu- -3'
miRNA:   3'- -CGCCG--CCGG-GGCGG-GUa-GCGGCUGcg -5'
23417 5' -65 NC_005259.1 + 61763 0.7 0.186055
Target:  5'- uGCGGCGGCaaucaCCGCCgCAUUcugcacaCCGGCGg -3'
miRNA:   3'- -CGCCGCCGg----GGCGG-GUAGc------GGCUGCg -5'
23417 5' -65 NC_005259.1 + 42473 0.7 0.186055
Target:  5'- aCGGCgaGGCCCgGCCCGUagaGCCGugaccCGUc -3'
miRNA:   3'- cGCCG--CCGGGgCGGGUAg--CGGCu----GCG- -5'
23417 5' -65 NC_005259.1 + 5535 0.7 0.190686
Target:  5'- uGUGGCuGCUCuCGCCCGagGCCG-CGUg -3'
miRNA:   3'- -CGCCGcCGGG-GCGGGUagCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 42919 0.7 0.190686
Target:  5'- uUGGUGGCCUUgagcaugagGCCC-UCGCCGugGg -3'
miRNA:   3'- cGCCGCCGGGG---------CGGGuAGCGGCugCg -5'
23417 5' -65 NC_005259.1 + 36864 0.7 0.190686
Target:  5'- uGCGccguuGCuGGCaCCGCCCG-CGCCGACGa -3'
miRNA:   3'- -CGC-----CG-CCGgGGCGGGUaGCGGCUGCg -5'
23417 5' -65 NC_005259.1 + 18534 0.7 0.199764
Target:  5'- uCGGCaaGGCagagCCCGCcgacgaaCCAUCGCCGuACGCc -3'
miRNA:   3'- cGCCG--CCG----GGGCG-------GGUAGCGGC-UGCG- -5'
23417 5' -65 NC_005259.1 + 3137 0.7 0.200252
Target:  5'- aGCGGaCGGCaCCGCCCGUgggacuacaCGgUGAUGCc -3'
miRNA:   3'- -CGCC-GCCGgGGCGGGUA---------GCgGCUGCG- -5'
23417 5' -65 NC_005259.1 + 37195 0.69 0.205189
Target:  5'- aGCuGCGGCCCuUGCcgCCAcCGCCGcCGCc -3'
miRNA:   3'- -CGcCGCCGGG-GCG--GGUaGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 25950 0.69 0.210232
Target:  5'- cCGGU-GCCCgGCCC---GCCGACGCc -3'
miRNA:   3'- cGCCGcCGGGgCGGGuagCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 18623 0.69 0.215381
Target:  5'- aGCGGUGugccgcgcaucGCCCCGUUC-UCGCauuGGCGCg -3'
miRNA:   3'- -CGCCGC-----------CGGGGCGGGuAGCGg--CUGCG- -5'
23417 5' -65 NC_005259.1 + 43264 0.69 0.217471
Target:  5'- cCGG-GuGCCUgagaguugaccgcagCGCCCGcCGCCGACGCg -3'
miRNA:   3'- cGCCgC-CGGG---------------GCGGGUaGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 41250 0.69 0.218522
Target:  5'- cCGGUGcGCCucaCCGCCCcggucgagcacccUCGUCGGCGCa -3'
miRNA:   3'- cGCCGC-CGG---GGCGGGu------------AGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 2162 0.69 0.220638
Target:  5'- aGCGGCGucGagCCGCCgGUUGCCGAgGUc -3'
miRNA:   3'- -CGCCGC--CggGGCGGgUAGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 38984 0.69 0.220638
Target:  5'- cGCGGauaCCCUGCCCAgccUCGuuGAgCGCg -3'
miRNA:   3'- -CGCCgccGGGGCGGGU---AGCggCU-GCG- -5'
23417 5' -65 NC_005259.1 + 43198 0.69 0.220638
Target:  5'- uCGGCGGCgaugucgacgCCCGCCUgaccCGCCGA-GCu -3'
miRNA:   3'- cGCCGCCG----------GGGCGGGua--GCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 37065 0.69 0.226547
Target:  5'- gGCGGCGGUguCCaCGUCCA-CGCaccggcggugguguaGACGCg -3'
miRNA:   3'- -CGCCGCCG--GG-GCGGGUaGCGg--------------CUGCG- -5'
23417 5' -65 NC_005259.1 + 24024 0.69 0.23148
Target:  5'- cGgGGCuGGCgaaauggaaCCGCCgcaaCGUCGUCGGCGCg -3'
miRNA:   3'- -CgCCG-CCGg--------GGCGG----GUAGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 4366 0.68 0.237068
Target:  5'- aCGGCacgcccguGCCCUGCUCAUCGCCaa-GCa -3'
miRNA:   3'- cGCCGc-------CGGGGCGGGUAGCGGcugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.