miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 12562 0.66 0.319552
Target:  5'- cGgGGUGGCCcgccagauccaugCCGCCCcacgCGUCGACccauGCg -3'
miRNA:   3'- -CgCCGCCGG-------------GGCGGGua--GCGGCUG----CG- -5'
23417 5' -65 NC_005259.1 + 14315 0.68 0.260554
Target:  5'- aUGGCcGCCCucgacgccgcCGCCCGcgugcgggcCGCCGACGCc -3'
miRNA:   3'- cGCCGcCGGG----------GCGGGUa--------GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 14707 0.67 0.306162
Target:  5'- cGCcGCGacgaacagcacGCCgCGCUCGUCGCCGAgauguaCGCg -3'
miRNA:   3'- -CGcCGC-----------CGGgGCGGGUAGCGGCU------GCG- -5'
23417 5' -65 NC_005259.1 + 15377 0.66 0.349927
Target:  5'- -gGGCGaGCUgCCGCaaCCGUgGCCG-CGCa -3'
miRNA:   3'- cgCCGC-CGG-GGCG--GGUAgCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 16457 0.68 0.272992
Target:  5'- uCGGCaucGGuaCCCCGCCgCAgaUCGCCGucaaggGCGCa -3'
miRNA:   3'- cGCCG---CC--GGGGCGG-GU--AGCGGC------UGCG- -5'
23417 5' -65 NC_005259.1 + 17362 0.67 0.285902
Target:  5'- uCGGCGGCUCggCGCUgGUCGUgguCGACuGCg -3'
miRNA:   3'- cGCCGCCGGG--GCGGgUAGCG---GCUG-CG- -5'
23417 5' -65 NC_005259.1 + 17884 0.72 0.134362
Target:  5'- uCGGuUGGacCCCCGCaCCGcgCGCCGAUGCg -3'
miRNA:   3'- cGCC-GCC--GGGGCG-GGUa-GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 18468 0.68 0.260554
Target:  5'- cCGGUccuGaGCCgUGCCCGaCGCCGACGa -3'
miRNA:   3'- cGCCG---C-CGGgGCGGGUaGCGGCUGCg -5'
23417 5' -65 NC_005259.1 + 18534 0.7 0.199764
Target:  5'- uCGGCaaGGCagagCCCGCcgacgaaCCAUCGCCGuACGCc -3'
miRNA:   3'- cGCCG--CCG----GGGCG-------GGUAGCGGC-UGCG- -5'
23417 5' -65 NC_005259.1 + 18623 0.69 0.215381
Target:  5'- aGCGGUGugccgcgcaucGCCCCGUUC-UCGCauuGGCGCg -3'
miRNA:   3'- -CGCCGC-----------CGGGGCGGGuAGCGg--CUGCG- -5'
23417 5' -65 NC_005259.1 + 18752 0.66 0.327503
Target:  5'- uCGGUGGUgcucgacauggCCUGCCaCAUCGCgGugGg -3'
miRNA:   3'- cGCCGCCG-----------GGGCGG-GUAGCGgCugCg -5'
23417 5' -65 NC_005259.1 + 19517 0.67 0.313156
Target:  5'- cGCGcGCGGaaauccucaCCgCCGUgCAg-GCCGACGCg -3'
miRNA:   3'- -CGC-CGCC---------GG-GGCGgGUagCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 19860 0.79 0.040198
Target:  5'- uGUGGCGcucGCgCCCGCCgGgaUCGCCGACGCc -3'
miRNA:   3'- -CGCCGC---CG-GGGCGGgU--AGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 22642 0.79 0.042408
Target:  5'- cGCGuCGGUCgacgCCGCCCAccacaUCGCCGACGCa -3'
miRNA:   3'- -CGCcGCCGG----GGCGGGU-----AGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 24024 0.69 0.23148
Target:  5'- cGgGGCuGGCgaaauggaaCCGCCgcaaCGUCGUCGGCGCg -3'
miRNA:   3'- -CgCCG-CCGg--------GGCGG----GUAGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 24122 0.71 0.160307
Target:  5'- gGCGGgGacuacaccGCCgCCGCCCugcUCGCCGaguuGCGCg -3'
miRNA:   3'- -CGCCgC--------CGG-GGCGGGu--AGCGGC----UGCG- -5'
23417 5' -65 NC_005259.1 + 25074 0.67 0.285902
Target:  5'- -gGGUGGCgCUGCCac-CGCCGcuGCGCc -3'
miRNA:   3'- cgCCGCCGgGGCGGguaGCGGC--UGCG- -5'
23417 5' -65 NC_005259.1 + 25950 0.69 0.210232
Target:  5'- cCGGU-GCCCgGCCC---GCCGACGCc -3'
miRNA:   3'- cGCCGcCGGGgCGGGuagCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 26378 0.66 0.349927
Target:  5'- gGUGGCGaGCCUguUGCUCG-CGauuCCGACGCc -3'
miRNA:   3'- -CGCCGC-CGGG--GCGGGUaGC---GGCUGCG- -5'
23417 5' -65 NC_005259.1 + 26414 0.73 0.106686
Target:  5'- cGCGGCGGUgCCGCCguagaacgCAcCGCCGA-GCg -3'
miRNA:   3'- -CGCCGCCGgGGCGG--------GUaGCGGCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.