miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 1782 0.67 0.285246
Target:  5'- -gGGUccgacgaGGCCCCcaagGCUguCAUgGCCGACGCg -3'
miRNA:   3'- cgCCG-------CCGGGG----CGG--GUAgCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 2082 0.66 0.327503
Target:  5'- -gGGCGGgCCUGCUcgauuuCAUCGgCGAgGCc -3'
miRNA:   3'- cgCCGCCgGGGCGG------GUAGCgGCUgCG- -5'
23417 5' -65 NC_005259.1 + 2162 0.69 0.220638
Target:  5'- aGCGGCGucGagCCGCCgGUUGCCGAgGUc -3'
miRNA:   3'- -CGCCGC--CggGGCGGgUAGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 2223 0.67 0.285902
Target:  5'- aGCGccCGGCCUCGCCauuuGUCGgCGACaGCc -3'
miRNA:   3'- -CGCc-GCCGGGGCGGg---UAGCgGCUG-CG- -5'
23417 5' -65 NC_005259.1 + 3137 0.7 0.200252
Target:  5'- aGCGGaCGGCaCCGCCCGUgggacuacaCGgUGAUGCc -3'
miRNA:   3'- -CGCC-GCCGgGGCGGGUA---------GCgGCUGCG- -5'
23417 5' -65 NC_005259.1 + 4117 0.68 0.253316
Target:  5'- uCGGCGGCCUCGacguggccaagaCCGUCGgCGAguucaaggaCGCg -3'
miRNA:   3'- cGCCGCCGGGGCg-----------GGUAGCgGCU---------GCG- -5'
23417 5' -65 NC_005259.1 + 4228 0.72 0.134362
Target:  5'- aGCaGGCcaagcaGGCCCCGCCCAcgUGCCucGACuGCg -3'
miRNA:   3'- -CG-CCG------CCGGGGCGGGUa-GCGG--CUG-CG- -5'
23417 5' -65 NC_005259.1 + 4302 0.68 0.268586
Target:  5'- cCGGCGGCCCUGCgaugagcgcgaccaaCCucgUGCCGGaccucguCGCg -3'
miRNA:   3'- cGCCGCCGGGGCG---------------GGua-GCGGCU-------GCG- -5'
23417 5' -65 NC_005259.1 + 4366 0.68 0.237068
Target:  5'- aCGGCacgcccguGCCCUGCUCAUCGCCaa-GCa -3'
miRNA:   3'- cGCCGc-------CGGGGCGGGUAGCGGcugCG- -5'
23417 5' -65 NC_005259.1 + 5535 0.7 0.190686
Target:  5'- uGUGGCuGCUCuCGCCCGagGCCG-CGUg -3'
miRNA:   3'- -CGCCGcCGGG-GCGGGUagCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 6407 0.72 0.144972
Target:  5'- gGCGGU-GCCCUgaugugGCCCGaccUCGCCGAUGUc -3'
miRNA:   3'- -CGCCGcCGGGG------CGGGU---AGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 6492 0.66 0.319552
Target:  5'- cGCGGguacugcUGGCCCa---CAUCGaCCGACGCc -3'
miRNA:   3'- -CGCC-------GCCGGGgcggGUAGC-GGCUGCG- -5'
23417 5' -65 NC_005259.1 + 7182 0.66 0.320269
Target:  5'- cCGGCGaguGCCCgGCCU---GCgGACGCa -3'
miRNA:   3'- cGCCGC---CGGGgCGGGuagCGgCUGCG- -5'
23417 5' -65 NC_005259.1 + 7428 0.68 0.272992
Target:  5'- uCGGCGGUgCCCGCgCCGcauggcagCGCCGAgGa -3'
miRNA:   3'- cGCCGCCG-GGGCG-GGUa-------GCGGCUgCg -5'
23417 5' -65 NC_005259.1 + 7965 0.68 0.266715
Target:  5'- uUGGUGGCCCaCGCCCAcCGCau-UGUu -3'
miRNA:   3'- cGCCGCCGGG-GCGGGUaGCGgcuGCG- -5'
23417 5' -65 NC_005259.1 + 8023 0.67 0.288541
Target:  5'- cCGGCGGCCaccccguuucgcgaaCUGUCCGacacCGCCGGuCGCc -3'
miRNA:   3'- cGCCGCCGG---------------GGCGGGUa---GCGGCU-GCG- -5'
23417 5' -65 NC_005259.1 + 8372 0.7 0.181524
Target:  5'- gGCGGCGGCCUCGgC-AUCGgCGAgaGCc -3'
miRNA:   3'- -CGCCGCCGGGGCgGgUAGCgGCUg-CG- -5'
23417 5' -65 NC_005259.1 + 8550 0.67 0.306162
Target:  5'- uCGGCGGUgUaGCCCAUgCGCCG-CaGCa -3'
miRNA:   3'- cGCCGCCGgGgCGGGUA-GCGGCuG-CG- -5'
23417 5' -65 NC_005259.1 + 11000 0.66 0.35764
Target:  5'- cGCaaCGGCaCCGCgCCGgacgCGCCGAgGCa -3'
miRNA:   3'- -CGccGCCGgGGCG-GGUa---GCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 11662 0.7 0.186055
Target:  5'- cGUGGCGGCCacaucgagccaCCGCCUcacuccaaAUCGCUGAUcucaaGCa -3'
miRNA:   3'- -CGCCGCCGG-----------GGCGGG--------UAGCGGCUG-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.