miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 37147 0.66 0.35764
Target:  5'- uGCGcGCauaGCCgucaCCGCCgCGccCGCCGACGCc -3'
miRNA:   3'- -CGC-CGc--CGG----GGCGG-GUa-GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 17884 0.72 0.134362
Target:  5'- uCGGuUGGacCCCCGCaCCGcgCGCCGAUGCg -3'
miRNA:   3'- cGCC-GCC--GGGGCG-GGUa-GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 6407 0.72 0.144972
Target:  5'- gGCGGU-GCCCUgaugugGCCCGaccUCGCCGAUGUc -3'
miRNA:   3'- -CGCCGcCGGGG------CGGGU---AGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 24122 0.71 0.160307
Target:  5'- gGCGGgGacuacaccGCCgCCGCCCugcUCGCCGaguuGCGCg -3'
miRNA:   3'- -CGCCgC--------CGG-GGCGGGu--AGCGGC----UGCG- -5'
23417 5' -65 NC_005259.1 + 28938 0.71 0.168512
Target:  5'- aGCaGGCGGCacgauCCugCGCCgCAUCGCCGAgGUc -3'
miRNA:   3'- -CG-CCGCCG-----GG--GCGG-GUAGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 38743 0.7 0.172325
Target:  5'- gGCGGUGG-CCCGCCgCAg-GCCGgugagcuGCGCg -3'
miRNA:   3'- -CGCCGCCgGGGCGG-GUagCGGC-------UGCG- -5'
23417 5' -65 NC_005259.1 + 34074 0.7 0.175344
Target:  5'- gGCGGCgguguccacacguaGGCCCUGUaCCAcaucgagaacgugUCGCCgGGCGCg -3'
miRNA:   3'- -CGCCG--------------CCGGGGCG-GGU-------------AGCGG-CUGCG- -5'
23417 5' -65 NC_005259.1 + 8372 0.7 0.181524
Target:  5'- gGCGGCGGCCUCGgC-AUCGgCGAgaGCc -3'
miRNA:   3'- -CGCCGCCGGGGCgGgUAGCgGCUg-CG- -5'
23417 5' -65 NC_005259.1 + 62013 0.7 0.181524
Target:  5'- uGCGGUGuaCCCGCUCGcgcugugUGUCGACGUa -3'
miRNA:   3'- -CGCCGCcgGGGCGGGUa------GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 27485 0.72 0.134362
Target:  5'- uCGGUguGGCCaCCGCCCcacgCGCCGAgGUc -3'
miRNA:   3'- cGCCG--CCGG-GGCGGGua--GCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 4228 0.72 0.134362
Target:  5'- aGCaGGCcaagcaGGCCCCGCCCAcgUGCCucGACuGCg -3'
miRNA:   3'- -CG-CCG------CCGGGGCGGGUa-GCGG--CUG-CG- -5'
23417 5' -65 NC_005259.1 + 45508 0.72 0.12769
Target:  5'- cGCuGUGGCCaCCGCgCCGguguuggcCGCCGugGCu -3'
miRNA:   3'- -CGcCGCCGG-GGCG-GGUa-------GCGGCugCG- -5'
23417 5' -65 NC_005259.1 + 22642 0.79 0.042408
Target:  5'- cGCGuCGGUCgacgCCGCCCAccacaUCGCCGACGCa -3'
miRNA:   3'- -CGCcGCCGG----GGCGGGU-----AGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 26674 0.77 0.053914
Target:  5'- cCGGCGGCagCCCGCCCAUCGa-GGCGg -3'
miRNA:   3'- cGCCGCCG--GGGCGGGUAGCggCUGCg -5'
23417 5' -65 NC_005259.1 + 60345 0.77 0.058385
Target:  5'- gGCGGCgaucaggucgaGGCCCUGCCCGaaaucccgccaaUCGCCGGacaGCg -3'
miRNA:   3'- -CGCCG-----------CCGGGGCGGGU------------AGCGGCUg--CG- -5'
23417 5' -65 NC_005259.1 + 60438 0.76 0.066646
Target:  5'- cGgGGCGGCCaCGCCCGacaccUCGauuCCGACGCu -3'
miRNA:   3'- -CgCCGCCGGgGCGGGU-----AGC---GGCUGCG- -5'
23417 5' -65 NC_005259.1 + 31248 0.75 0.076027
Target:  5'- cGCGGCGGUgCCGCCCcacaCGCCgcaguaggcgGugGCg -3'
miRNA:   3'- -CGCCGCCGgGGCGGGua--GCGG----------CugCG- -5'
23417 5' -65 NC_005259.1 + 36648 0.74 0.093717
Target:  5'- cGCGaucaGCGaGCCgCCGCCC-UCGCCGcCGCc -3'
miRNA:   3'- -CGC----CGC-CGG-GGCGGGuAGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 26414 0.73 0.106686
Target:  5'- cGCGGCGGUgCCGCCguagaacgCAcCGCCGA-GCg -3'
miRNA:   3'- -CGCCGCCGgGGCGG--------GUaGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 60127 0.72 0.124471
Target:  5'- uCGGCGGCCUCGUCCugcgcggccuUgGCCGcCGCc -3'
miRNA:   3'- cGCCGCCGGGGCGGGu---------AgCGGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.