miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23424 3' -59.1 NC_005259.1 + 16220 0.66 0.561418
Target:  5'- cUGAUCagguGGGCCGAacgcacccCGGUGCUGCGc- -3'
miRNA:   3'- -ACUGG----CCUGGCUga------GCCACGACGCua -5'
23424 3' -59.1 NC_005259.1 + 23719 0.66 0.551027
Target:  5'- -cGCCGGACgG-UUCGGUGCUcacgugggacgGCGAc -3'
miRNA:   3'- acUGGCCUGgCuGAGCCACGA-----------CGCUa -5'
23424 3' -59.1 NC_005259.1 + 29001 0.67 0.500084
Target:  5'- cGGCCacgaGAUCGGCgaaugCGGUGuCUGCGGUc -3'
miRNA:   3'- aCUGGc---CUGGCUGa----GCCAC-GACGCUA- -5'
23424 3' -59.1 NC_005259.1 + 7347 0.68 0.451333
Target:  5'- aGGCCGGACaGACguucGUGCUGUGGc -3'
miRNA:   3'- aCUGGCCUGgCUGagc-CACGACGCUa -5'
23424 3' -59.1 NC_005259.1 + 33911 0.68 0.423361
Target:  5'- gGGCCGaGACCGGCcaCGGUGCgaGCa-- -3'
miRNA:   3'- aCUGGC-CUGGCUGa-GCCACGa-CGcua -5'
23424 3' -59.1 NC_005259.1 + 46986 0.68 0.423361
Target:  5'- aUGAUCGGGCCGAg--GGUGCgccacGCGAg -3'
miRNA:   3'- -ACUGGCCUGGCUgagCCACGa----CGCUa -5'
23424 3' -59.1 NC_005259.1 + 66657 0.69 0.414271
Target:  5'- -uGCCGG-UCGg--CGGUGCUGCGAUg -3'
miRNA:   3'- acUGGCCuGGCugaGCCACGACGCUA- -5'
23424 3' -59.1 NC_005259.1 + 5073 0.69 0.405301
Target:  5'- gGGCCGGGUCGACgggcCGGUGUcaccgGCGAUc -3'
miRNA:   3'- aCUGGCCUGGCUGa---GCCACGa----CGCUA- -5'
23424 3' -59.1 NC_005259.1 + 62736 0.69 0.387734
Target:  5'- cGACCGGACCGGCggcaguacgCGGUGgUacucGUGGg -3'
miRNA:   3'- aCUGGCCUGGCUGa--------GCCACgA----CGCUa -5'
23424 3' -59.1 NC_005259.1 + 20993 0.69 0.37914
Target:  5'- cGugUGGGCCuACUCGG-GCgGCGAc -3'
miRNA:   3'- aCugGCCUGGcUGAGCCaCGaCGCUa -5'
23424 3' -59.1 NC_005259.1 + 50414 0.69 0.369835
Target:  5'- -cGCCGGugccuugACCGGCUCGG-GCaGCGGUg -3'
miRNA:   3'- acUGGCC-------UGGCUGAGCCaCGaCGCUA- -5'
23424 3' -59.1 NC_005259.1 + 4682 0.7 0.330318
Target:  5'- cUGGCuCGGGCCGacaGCUCGGccccgUGgUGCGAUg -3'
miRNA:   3'- -ACUG-GCCUGGC---UGAGCC-----ACgACGCUA- -5'
23424 3' -59.1 NC_005259.1 + 56032 0.71 0.307702
Target:  5'- gGGCgGGACUucCUCGGgcgGCUGCGGg -3'
miRNA:   3'- aCUGgCCUGGcuGAGCCa--CGACGCUa -5'
23424 3' -59.1 NC_005259.1 + 26814 0.74 0.181887
Target:  5'- uUGGCCGGuACCGGCggUGGUGCcgggGCGGUc -3'
miRNA:   3'- -ACUGGCC-UGGCUGa-GCCACGa---CGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.