miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23428 5' -56.7 NC_005259.1 + 65116 0.81 0.086025
Target:  5'- aGUGCGUCAccgucGgCGCACCGGC-GGCCACc -3'
miRNA:   3'- -CAUGCAGU-----UgGUGUGGCCGuCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 13616 0.79 0.123531
Target:  5'- -cACGgCAACCACAUCuGCGGGCCGCu -3'
miRNA:   3'- caUGCaGUUGGUGUGGcCGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 44405 0.76 0.185344
Target:  5'- -cACGUCGgugcccGCCugACCGGCAGcGCCGa -3'
miRNA:   3'- caUGCAGU------UGGugUGGCCGUC-CGGUg -5'
23428 5' -56.7 NC_005259.1 + 725 0.76 0.205933
Target:  5'- -cGCGagAAUCACACCGGCGGuGCCuACg -3'
miRNA:   3'- caUGCagUUGGUGUGGCCGUC-CGG-UG- -5'
23428 5' -56.7 NC_005259.1 + 45502 0.75 0.21138
Target:  5'- cUugGUCGcuguggccACCGCGCCGGUguuGGCCGCc -3'
miRNA:   3'- cAugCAGU--------UGGUGUGGCCGu--CCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 48037 0.75 0.216951
Target:  5'- -gAUGUUGACCACcCCGGU-GGCCACg -3'
miRNA:   3'- caUGCAGUUGGUGuGGCCGuCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 67724 0.75 0.222648
Target:  5'- --cCGUCAGCCucgauccgAUACCGGC-GGCCACu -3'
miRNA:   3'- cauGCAGUUGG--------UGUGGCCGuCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 45295 0.75 0.233821
Target:  5'- -cAUGUUuACCGCGCCGGUgacgccgAGGCCGCc -3'
miRNA:   3'- caUGCAGuUGGUGUGGCCG-------UCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 62991 0.74 0.272899
Target:  5'- -cGCGUCGACUcgaugGCAUUGGCAGGCUg- -3'
miRNA:   3'- caUGCAGUUGG-----UGUGGCCGUCCGGug -5'
23428 5' -56.7 NC_005259.1 + 57451 0.73 0.286807
Target:  5'- gGUugGUgCGA-CGCugCGGCAGGCCGg -3'
miRNA:   3'- -CAugCA-GUUgGUGugGCCGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 35604 0.73 0.286807
Target:  5'- gGUGCGUCcuGGCCACGCUGcGUcgaguaguucGGGCCGCc -3'
miRNA:   3'- -CAUGCAG--UUGGUGUGGC-CG----------UCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 14532 0.73 0.286807
Target:  5'- gGUGCGUUucgguGCCGaguucguCCGGCAGGCCGa -3'
miRNA:   3'- -CAUGCAGu----UGGUgu-----GGCCGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 19904 0.73 0.293967
Target:  5'- uGUGCGaCAACCACGguuUCGGCaaGGGCCAg -3'
miRNA:   3'- -CAUGCaGUUGGUGU---GGCCG--UCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 2165 0.72 0.323999
Target:  5'- -gGCGUCGAgC-CGCCGGUugccgaggucauGGGCCGCu -3'
miRNA:   3'- caUGCAGUUgGuGUGGCCG------------UCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 24169 0.71 0.364667
Target:  5'- cUACGcCAACCACACCaaGGUGGGCgAg -3'
miRNA:   3'- cAUGCaGUUGGUGUGG--CCGUCCGgUg -5'
23428 5' -56.7 NC_005259.1 + 3978 0.71 0.373213
Target:  5'- -aGCGgucccgCGAgCACGCgaUGGCGGGCCGCg -3'
miRNA:   3'- caUGCa-----GUUgGUGUG--GCCGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 51245 0.71 0.373213
Target:  5'- gGUACGUCAcGCCGUugCGGCucgcgguGGUCACg -3'
miRNA:   3'- -CAUGCAGU-UGGUGugGCCGu------CCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 46578 0.71 0.373213
Target:  5'- -gGCGUCGACCGCGCCGcccgaggcgaGCAGcGCguCg -3'
miRNA:   3'- caUGCAGUUGGUGUGGC----------CGUC-CGguG- -5'
23428 5' -56.7 NC_005259.1 + 767 0.71 0.408729
Target:  5'- -cGCGUCcACCGCGCCgaGGC-GGCUGCc -3'
miRNA:   3'- caUGCAGuUGGUGUGG--CCGuCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 49564 0.7 0.417933
Target:  5'- uGUuCGUCGgucgugGCCAgACCGGCGGGCgGg -3'
miRNA:   3'- -CAuGCAGU------UGGUgUGGCCGUCCGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.