miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23428 5' -56.7 NC_005259.1 + 424 0.66 0.702305
Target:  5'- --cCGUCGAggaugaCGCACCgaucuacgucacgguGGCAGGCCAg -3'
miRNA:   3'- cauGCAGUUg-----GUGUGG---------------CCGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 725 0.76 0.205933
Target:  5'- -cGCGagAAUCACACCGGCGGuGCCuACg -3'
miRNA:   3'- caUGCagUUGGUGUGGCCGUC-CGG-UG- -5'
23428 5' -56.7 NC_005259.1 + 767 0.71 0.408729
Target:  5'- -cGCGUCcACCGCGCCgaGGC-GGCUGCc -3'
miRNA:   3'- caUGCAGuUGGUGUGG--CCGuCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 2165 0.72 0.323999
Target:  5'- -gGCGUCGAgC-CGCCGGUugccgaggucauGGGCCGCu -3'
miRNA:   3'- caUGCAGUUgGuGUGGCCG------------UCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 3978 0.71 0.373213
Target:  5'- -aGCGgucccgCGAgCACGCgaUGGCGGGCCGCg -3'
miRNA:   3'- caUGCa-----GUUgGUGUG--GCCGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 5402 0.69 0.475671
Target:  5'- cGU-CGUCAucacCCGCGCUGGCc-GCCACg -3'
miRNA:   3'- -CAuGCAGUu---GGUGUGGCCGucCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 7238 0.67 0.611863
Target:  5'- -gACGgCAGCCGCGCCGGUgucgaguGcGCCAa -3'
miRNA:   3'- caUGCaGUUGGUGUGGCCGu------C-CGGUg -5'
23428 5' -56.7 NC_005259.1 + 8662 0.7 0.465765
Target:  5'- ---gGUCGggcuGCCACGCgGGCaacgGGGCCGCc -3'
miRNA:   3'- caugCAGU----UGGUGUGgCCG----UCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 9411 0.66 0.68632
Target:  5'- gGUACGggugcGCCACACCGuugucgaGCAG-CCACa -3'
miRNA:   3'- -CAUGCagu--UGGUGUGGC-------CGUCcGGUG- -5'
23428 5' -56.7 NC_005259.1 + 9523 0.69 0.485681
Target:  5'- -cGCGUCGACC--GCCGcCGGGUCACc -3'
miRNA:   3'- caUGCAGUUGGugUGGCcGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 13616 0.79 0.123531
Target:  5'- -cACGgCAACCACAUCuGCGGGCCGCu -3'
miRNA:   3'- caUGCaGUUGGUGUGGcCGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 14180 0.69 0.475671
Target:  5'- -gGCGgguggCAACCGCucacccCCGaGCAGGCCGg -3'
miRNA:   3'- caUGCa----GUUGGUGu-----GGC-CGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 14308 0.67 0.643235
Target:  5'- gGUGCGUaUGGCCGCccucgacGCCGccgcccgcguGCGGGCCGCc -3'
miRNA:   3'- -CAUGCA-GUUGGUG-------UGGC----------CGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 14503 0.67 0.644317
Target:  5'- gGUGCccgCAugCACACCGGCGaGCaCGCn -3'
miRNA:   3'- -CAUGca-GUugGUGUGGCCGUcCG-GUG- -5'
23428 5' -56.7 NC_005259.1 + 14532 0.73 0.286807
Target:  5'- gGUGCGUUucgguGCCGaguucguCCGGCAGGCCGa -3'
miRNA:   3'- -CAUGCAGu----UGGUgu-----GGCCGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 15237 0.65 0.705485
Target:  5'- -aACGUCGACCGCGaauauCUGGaccgcuaccucaauCAGGUCGCc -3'
miRNA:   3'- caUGCAGUUGGUGU-----GGCC--------------GUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 18124 0.7 0.455968
Target:  5'- cUACGagGGCaACAUCGGCaAGGCCAUg -3'
miRNA:   3'- cAUGCagUUGgUGUGGCCG-UCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 19124 0.7 0.455968
Target:  5'- uGUGCGUCGugcACCACACgaGuaAGGCaCACa -3'
miRNA:   3'- -CAUGCAGU---UGGUGUGg-CcgUCCG-GUG- -5'
23428 5' -56.7 NC_005259.1 + 19904 0.73 0.293967
Target:  5'- uGUGCGaCAACCACGguuUCGGCaaGGGCCAg -3'
miRNA:   3'- -CAUGCaGUUGGUGU---GGCCG--UCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 21272 0.68 0.547635
Target:  5'- gGU-CGUCGGCCugA-CGaGCAGGCCGa -3'
miRNA:   3'- -CAuGCAGUUGGugUgGC-CGUCCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.