Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23429 | 3' | -53.1 | NC_005259.1 | + | 68746 | 0.74 | 0.442851 |
Target: 5'- gCCGAgcUCGaccCCGGCGACCUCGccaucgguguacuuGAGCAggUCg -3' miRNA: 3'- -GGCU--AGU---GGCCGCUGGAGU--------------UUCGU--AG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 68572 | 0.68 | 0.763304 |
Target: 5'- aCCGAgguggaccUCGuauCCGGCGGCCacCGcAGCGUCa -3' miRNA: 3'- -GGCU--------AGU---GGCCGCUGGa-GUuUCGUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 67777 | 0.71 | 0.635157 |
Target: 5'- aCCGAcCACgCGGUGACCUUguuGGCAc- -3' miRNA: 3'- -GGCUaGUG-GCCGCUGGAGuu-UCGUag -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 67737 | 0.7 | 0.667938 |
Target: 5'- uCCGAU-ACCGGCGGCCacuAGGCcgCc -3' miRNA: 3'- -GGCUAgUGGCCGCUGGaguUUCGuaG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 65806 | 0.69 | 0.721763 |
Target: 5'- gCUGGUCgaaacgcugGCCGuCGACCUCGAAGUAg- -3' miRNA: 3'- -GGCUAG---------UGGCcGCUGGAGUUUCGUag -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 65218 | 0.68 | 0.763304 |
Target: 5'- aUGAUgACCGGCcuGACCUCGu--CGUCa -3' miRNA: 3'- gGCUAgUGGCCG--CUGGAGUuucGUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 63865 | 0.67 | 0.83046 |
Target: 5'- -aGGUgGCCGGCuGGCCUUgcguGGGCGUg -3' miRNA: 3'- ggCUAgUGGCCG-CUGGAGu---UUCGUAg -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 63237 | 0.69 | 0.753091 |
Target: 5'- -gGGUCGCUGGUcaGACC-CGAcGCGUCg -3' miRNA: 3'- ggCUAGUGGCCG--CUGGaGUUuCGUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 61786 | 0.67 | 0.85635 |
Target: 5'- uCUGcaCACCGGCGGCCUgAuAGCc-- -3' miRNA: 3'- -GGCuaGUGGCCGCUGGAgUuUCGuag -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 60120 | 0.68 | 0.793102 |
Target: 5'- cUCGA-UAUCGGCGGCCUCGuccuGCGc- -3' miRNA: 3'- -GGCUaGUGGCCGCUGGAGUuu--CGUag -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 59396 | 0.68 | 0.802716 |
Target: 5'- uCCGcgCGCgaGcGUGACCUCGcgcauGGCGUCg -3' miRNA: 3'- -GGCuaGUGg-C-CGCUGGAGUu----UCGUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 58392 | 0.66 | 0.894774 |
Target: 5'- aCGGUgcgcaccagcCACCGGCGGCgaUCAGAG-AUCc -3' miRNA: 3'- gGCUA----------GUGGCCGCUGg-AGUUUCgUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 58341 | 0.69 | 0.721763 |
Target: 5'- -aGAUCAggUCGGUGGCCUC-GGGCAcgUCg -3' miRNA: 3'- ggCUAGU--GGCCGCUGGAGuUUCGU--AG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 57994 | 0.66 | 0.894774 |
Target: 5'- cCCGGUCgaGCCaGCGACCauguuGAGgAUCg -3' miRNA: 3'- -GGCUAG--UGGcCGCUGGagu--UUCgUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 56614 | 0.68 | 0.767353 |
Target: 5'- aCGGUaCGCuCGGCGAuugcugcauaguuguUCUCgAAAGCAUCg -3' miRNA: 3'- gGCUA-GUG-GCCGCU---------------GGAG-UUUCGUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 53014 | 0.79 | 0.250953 |
Target: 5'- aCUGGgcgCugCGGUGGCgUCGAGGCAUCg -3' miRNA: 3'- -GGCUa--GugGCCGCUGgAGUUUCGUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 52570 | 0.7 | 0.70042 |
Target: 5'- aUGGUCgACCGGacCGGCCU--GAGCGUCg -3' miRNA: 3'- gGCUAG-UGGCC--GCUGGAguUUCGUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 51993 | 0.67 | 0.839308 |
Target: 5'- aCCGA-CGCCGaucuCGACCggaugCAcGAGCGUCa -3' miRNA: 3'- -GGCUaGUGGCc---GCUGGa----GU-UUCGUAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 50406 | 0.69 | 0.753091 |
Target: 5'- gCCGAgcgCGCCGGUG-CCUUGAccGGC-UCg -3' miRNA: 3'- -GGCUa--GUGGCCGCuGGAGUU--UCGuAG- -5' |
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23429 | 3' | -53.1 | NC_005259.1 | + | 44996 | 0.68 | 0.783321 |
Target: 5'- gCCGAggCACCGcCGACCgcCGGGGCcgCg -3' miRNA: 3'- -GGCUa-GUGGCcGCUGGa-GUUUCGuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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