miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23429 3' -53.1 NC_005259.1 + 60120 0.68 0.793102
Target:  5'- cUCGA-UAUCGGCGGCCUCGuccuGCGc- -3'
miRNA:   3'- -GGCUaGUGGCCGCUGGAGUuu--CGUag -5'
23429 3' -53.1 NC_005259.1 + 44996 0.68 0.783321
Target:  5'- gCCGAggCACCGcCGACCgcCGGGGCcgCg -3'
miRNA:   3'- -GGCUa-GUGGCcGCUGGa-GUUUCGuaG- -5'
23429 3' -53.1 NC_005259.1 + 56614 0.68 0.767353
Target:  5'- aCGGUaCGCuCGGCGAuugcugcauaguuguUCUCgAAAGCAUCg -3'
miRNA:   3'- gGCUA-GUG-GCCGCU---------------GGAG-UUUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 65218 0.68 0.763304
Target:  5'- aUGAUgACCGGCcuGACCUCGu--CGUCa -3'
miRNA:   3'- gGCUAgUGGCCG--CUGGAGUuucGUAG- -5'
23429 3' -53.1 NC_005259.1 + 68572 0.68 0.763304
Target:  5'- aCCGAgguggaccUCGuauCCGGCGGCCacCGcAGCGUCa -3'
miRNA:   3'- -GGCU--------AGU---GGCCGCUGGa-GUuUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 2048 0.69 0.753091
Target:  5'- gCGGUCACCGGC-ACCgagaCAcGGCGguUCa -3'
miRNA:   3'- gGCUAGUGGCCGcUGGa---GUuUCGU--AG- -5'
23429 3' -53.1 NC_005259.1 + 31892 0.69 0.753091
Target:  5'- gCCGGUCucaaggcCCGGCGcgagcGCCUCAAucuCGUCa -3'
miRNA:   3'- -GGCUAGu------GGCCGC-----UGGAGUUuc-GUAG- -5'
23429 3' -53.1 NC_005259.1 + 50406 0.69 0.753091
Target:  5'- gCCGAgcgCGCCGGUG-CCUUGAccGGC-UCg -3'
miRNA:   3'- -GGCUa--GUGGCCGCuGGAGUU--UCGuAG- -5'
23429 3' -53.1 NC_005259.1 + 63237 0.69 0.753091
Target:  5'- -gGGUCGCUGGUcaGACC-CGAcGCGUCg -3'
miRNA:   3'- ggCUAGUGGCCG--CUGGaGUUuCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 22526 0.69 0.742755
Target:  5'- aCCG-UCGCCGGUGAUUUCc-AGCAg- -3'
miRNA:   3'- -GGCuAGUGGCCGCUGGAGuuUCGUag -5'
23429 3' -53.1 NC_005259.1 + 19645 0.69 0.742755
Target:  5'- aCGcUCACCGGCaccGCCUCGGgcAGCcgCu -3'
miRNA:   3'- gGCuAGUGGCCGc--UGGAGUU--UCGuaG- -5'
23429 3' -53.1 NC_005259.1 + 65806 0.69 0.721763
Target:  5'- gCUGGUCgaaacgcugGCCGuCGACCUCGAAGUAg- -3'
miRNA:   3'- -GGCUAG---------UGGCcGCUGGAGUUUCGUag -5'
23429 3' -53.1 NC_005259.1 + 17244 0.69 0.721763
Target:  5'- gCCGGUCucacGCUGGCcACCUCAgacaAGGCAg- -3'
miRNA:   3'- -GGCUAG----UGGCCGcUGGAGU----UUCGUag -5'
23429 3' -53.1 NC_005259.1 + 58341 0.69 0.721763
Target:  5'- -aGAUCAggUCGGUGGCCUC-GGGCAcgUCg -3'
miRNA:   3'- ggCUAGU--GGCCGCUGGAGuUUCGU--AG- -5'
23429 3' -53.1 NC_005259.1 + 52570 0.7 0.70042
Target:  5'- aUGGUCgACCGGacCGGCCU--GAGCGUCg -3'
miRNA:   3'- gGCUAG-UGGCC--GCUGGAguUUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 42913 0.7 0.70042
Target:  5'- -aGAUCGuuGGUGGCCUUG-AGCAUg -3'
miRNA:   3'- ggCUAGUggCCGCUGGAGUuUCGUAg -5'
23429 3' -53.1 NC_005259.1 + 42763 0.7 0.678813
Target:  5'- cUCGAUCuGCuCGGCGGUCUCGGGGCcgCc -3'
miRNA:   3'- -GGCUAG-UG-GCCGCUGGAGUUUCGuaG- -5'
23429 3' -53.1 NC_005259.1 + 67737 0.7 0.667938
Target:  5'- uCCGAU-ACCGGCGGCCacuAGGCcgCc -3'
miRNA:   3'- -GGCUAgUGGCCGCUGGaguUUCGuaG- -5'
23429 3' -53.1 NC_005259.1 + 6516 0.7 0.657031
Target:  5'- aCCGA-CGCCGuGCGcgcgacaaccgGCCUCGGGGCGa- -3'
miRNA:   3'- -GGCUaGUGGC-CGC-----------UGGAGUUUCGUag -5'
23429 3' -53.1 NC_005259.1 + 67777 0.71 0.635157
Target:  5'- aCCGAcCACgCGGUGACCUUguuGGCAc- -3'
miRNA:   3'- -GGCUaGUG-GCCGCUGGAGuu-UCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.