miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23432 3' -54.8 NC_005259.1 + 24363 0.81 0.142106
Target:  5'- uCGcACACCGagGuCUGGUGGCGCUACCg -3'
miRNA:   3'- -GCaUGUGGCagC-GACUACCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 45399 0.79 0.180898
Target:  5'- gGU-CGCCGccgagcgCGCUGAUGGCcGCCGCCg -3'
miRNA:   3'- gCAuGUGGCa------GCGACUACCG-UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 36860 0.79 0.180898
Target:  5'- cCGcUGCGCCGUUGC---UGGCACCGCCc -3'
miRNA:   3'- -GC-AUGUGGCAGCGacuACCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 42199 0.79 0.180898
Target:  5'- --cGCGCCGUCGCgaugGAUGcccgccGCGCCGCCg -3'
miRNA:   3'- gcaUGUGGCAGCGa---CUAC------CGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 44064 0.77 0.246984
Target:  5'- aGUGCGCUGUCGUUGAgcuucUGGCugACCugCu -3'
miRNA:   3'- gCAUGUGGCAGCGACU-----ACCG--UGGugG- -5'
23432 3' -54.8 NC_005259.1 + 30763 0.75 0.324029
Target:  5'- --cAUGCCGaCGCcGGUGGCACCGCUg -3'
miRNA:   3'- gcaUGUGGCaGCGaCUACCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 53258 0.75 0.331858
Target:  5'- cCGU-CGCCGcCGCUGucgccGGUGCCGCCa -3'
miRNA:   3'- -GCAuGUGGCaGCGACua---CCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 6439 0.75 0.347929
Target:  5'- uGUcgGCACCGUCGCgcUGAUcGGCAgcgUCGCCg -3'
miRNA:   3'- gCA--UGUGGCAGCG--ACUA-CCGU---GGUGG- -5'
23432 3' -54.8 NC_005259.1 + 3121 0.73 0.426898
Target:  5'- gCGcgGCACCGUgggcaGCgGAcGGCACCGCCc -3'
miRNA:   3'- -GCa-UGUGGCAg----CGaCUaCCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 46336 0.72 0.492115
Target:  5'- gCGUcgcGCACCGcUuguagguucugggcCGC-GAUGGCACCGCCc -3'
miRNA:   3'- -GCA---UGUGGC-A--------------GCGaCUACCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 60679 0.71 0.515556
Target:  5'- gCGUucuGCACCGa-GC-GGUGGCACgCACCa -3'
miRNA:   3'- -GCA---UGUGGCagCGaCUACCGUG-GUGG- -5'
23432 3' -54.8 NC_005259.1 + 53713 0.71 0.515556
Target:  5'- aCGUGguCACCGcgcCGCUGAUGGUGaugUCGCCg -3'
miRNA:   3'- -GCAU--GUGGCa--GCGACUACCGU---GGUGG- -5'
23432 3' -54.8 NC_005259.1 + 15538 0.71 0.525889
Target:  5'- aGgcCGCCGUCaCUGGccGGUGCCACCc -3'
miRNA:   3'- gCauGUGGCAGcGACUa-CCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 3511 0.71 0.546778
Target:  5'- uGUGCGCCGcCGCguucaacgGGCACgaCACCg -3'
miRNA:   3'- gCAUGUGGCaGCGacua----CCGUG--GUGG- -5'
23432 3' -54.8 NC_005259.1 + 50101 0.7 0.59356
Target:  5'- gGUGCGCCcgagGUUGCccguacgcacgGGCACCGCCa -3'
miRNA:   3'- gCAUGUGG----CAGCGacua-------CCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 58667 0.7 0.596779
Target:  5'- gGUGCACCGgggugcagcuuccaUCGCggGGUcGGCucgucGCCGCCg -3'
miRNA:   3'- gCAUGUGGC--------------AGCGa-CUA-CCG-----UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 44913 0.7 0.600001
Target:  5'- uGUGgGCCGccgcauacgCGCUGAucggguccaUGGCACCAgCg -3'
miRNA:   3'- gCAUgUGGCa--------GCGACU---------ACCGUGGUgG- -5'
23432 3' -54.8 NC_005259.1 + 51705 0.69 0.625842
Target:  5'- gGUGCcgaACUGUCGaCcggacaaggcccacaUGAUGGcCACCGCCa -3'
miRNA:   3'- gCAUG---UGGCAGC-G---------------ACUACC-GUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 7433 0.69 0.632312
Target:  5'- gGUGC-CCG-CGCcGcAUGGCAgCGCCg -3'
miRNA:   3'- gCAUGuGGCaGCGaC-UACCGUgGUGG- -5'
23432 3' -54.8 NC_005259.1 + 50015 0.69 0.643094
Target:  5'- uCGUGCACgGgCGCUGcguaauccgcuGUGGCcucgacACCGCCc -3'
miRNA:   3'- -GCAUGUGgCaGCGAC-----------UACCG------UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.