miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23432 3' -54.8 NC_005259.1 + 3121 0.73 0.426898
Target:  5'- gCGcgGCACCGUgggcaGCgGAcGGCACCGCCc -3'
miRNA:   3'- -GCa-UGUGGCAg----CGaCUaCCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 3511 0.71 0.546778
Target:  5'- uGUGCGCCGcCGCguucaacgGGCACgaCACCg -3'
miRNA:   3'- gCAUGUGGCaGCGacua----CCGUG--GUGG- -5'
23432 3' -54.8 NC_005259.1 + 4509 0.69 0.66462
Target:  5'- --cGCGCCGggaguggCGCUGcgcGGCACC-CCg -3'
miRNA:   3'- gcaUGUGGCa------GCGACua-CCGUGGuGG- -5'
23432 3' -54.8 NC_005259.1 + 6439 0.75 0.347929
Target:  5'- uGUcgGCACCGUCGCgcUGAUcGGCAgcgUCGCCg -3'
miRNA:   3'- gCA--UGUGGCAGCG--ACUA-CCGU---GGUGG- -5'
23432 3' -54.8 NC_005259.1 + 7433 0.69 0.632312
Target:  5'- gGUGC-CCG-CGCcGcAUGGCAgCGCCg -3'
miRNA:   3'- gCAUGuGGCaGCGaC-UACCGUgGUGG- -5'
23432 3' -54.8 NC_005259.1 + 7636 0.69 0.653867
Target:  5'- -cUACACCGUCGCcGAguucgACCGCCg -3'
miRNA:   3'- gcAUGUGGCAGCGaCUaccg-UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 8478 0.68 0.728168
Target:  5'- aCGaGCACCG-CGCUGucGGCACugauggugugCACCa -3'
miRNA:   3'- -GCaUGUGGCaGCGACuaCCGUG----------GUGG- -5'
23432 3' -54.8 NC_005259.1 + 9507 0.68 0.676415
Target:  5'- aCGUGCGCuCGUCGCgcgcgucgacCGCCGCCg -3'
miRNA:   3'- -GCAUGUG-GCAGCGacuacc----GUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 11020 0.67 0.768833
Target:  5'- --cGCGCCGaggcaggaguUCGCcgGGUGGuCACCGCa -3'
miRNA:   3'- gcaUGUGGC----------AGCGa-CUACC-GUGGUGg -5'
23432 3' -54.8 NC_005259.1 + 11130 0.68 0.686029
Target:  5'- gGUGCgaGCCGUCGcCUGcgGGUAaCACUu -3'
miRNA:   3'- gCAUG--UGGCAGC-GACuaCCGUgGUGG- -5'
23432 3' -54.8 NC_005259.1 + 12135 0.66 0.820182
Target:  5'- --aGCACCGggucUGCUuucuugaucaccgccGAcGGCACCGCCc -3'
miRNA:   3'- gcaUGUGGCa---GCGA---------------CUaCCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 12221 0.67 0.7385
Target:  5'- --cGCACCGccCGCUGGccgggcaaUGGUcacACCGCCu -3'
miRNA:   3'- gcaUGUGGCa-GCGACU--------ACCG---UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 15196 0.69 0.653867
Target:  5'- uCGUGCACCGcaugaUGCUG-UGGCGCuCGgCg -3'
miRNA:   3'- -GCAUGUGGCa----GCGACuACCGUG-GUgG- -5'
23432 3' -54.8 NC_005259.1 + 15538 0.71 0.525889
Target:  5'- aGgcCGCCGUCaCUGGccGGUGCCACCc -3'
miRNA:   3'- gCauGUGGCAGcGACUa-CCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 19103 0.68 0.717745
Target:  5'- gCGaacuCACCGgCGCUGGUGugugcgucguGCACCACa -3'
miRNA:   3'- -GCau--GUGGCaGCGACUAC----------CGUGGUGg -5'
23432 3' -54.8 NC_005259.1 + 20133 0.68 0.674273
Target:  5'- uGgcUGCCGUCGCgaUGAcGGCagccggugcccugGCCACCg -3'
miRNA:   3'- gCauGUGGCAGCG--ACUaCCG-------------UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 21595 0.67 0.748728
Target:  5'- gCG-ACACCGccaaGCUGAUcuaCACCACCg -3'
miRNA:   3'- -GCaUGUGGCag--CGACUAcc-GUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 22518 0.66 0.806407
Target:  5'- aCGUgcGCACCGUCGCcGGUGauuuccaGCAguccgaccUCGCCg -3'
miRNA:   3'- -GCA--UGUGGCAGCGaCUAC-------CGU--------GGUGG- -5'
23432 3' -54.8 NC_005259.1 + 24264 0.69 0.643094
Target:  5'- gCGUGCACgCGUgGCUGGaaGCGCUcgACCu -3'
miRNA:   3'- -GCAUGUG-GCAgCGACUacCGUGG--UGG- -5'
23432 3' -54.8 NC_005259.1 + 24363 0.81 0.142106
Target:  5'- uCGcACACCGagGuCUGGUGGCGCUACCg -3'
miRNA:   3'- -GCaUGUGGCagC-GACUACCGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.