Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23432 | 5' | -57.3 | NC_005259.1 | + | 58941 | 0.79 | 0.109184 |
Target: 5'- cGCGGUGGCAGCGUCGgccuuggccagcAGGUCGGGCa- -3' miRNA: 3'- -UGUCGUUGUCGUAGC------------UCCAGCCCGgc -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 8741 | 0.77 | 0.159685 |
Target: 5'- -aGGCAGuCAGCccGUCGAGGUCGaGGCCc -3' miRNA: 3'- ugUCGUU-GUCG--UAGCUCCAGC-CCGGc -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 64221 | 0.75 | 0.207806 |
Target: 5'- uCGGCAGCccGGUAUCGGGGUCGauaGCCGa -3' miRNA: 3'- uGUCGUUG--UCGUAGCUCCAGCc--CGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 9171 | 0.75 | 0.213254 |
Target: 5'- cCGGUGGCAGCcgaugcaaugGUCGAGGUCgucauacgGGGCCGg -3' miRNA: 3'- uGUCGUUGUCG----------UAGCUCCAG--------CCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 28942 | 0.74 | 0.242353 |
Target: 5'- gGCGGCAcgauccugcGCcGCAUcgcCGAGGUCGGuGCCGa -3' miRNA: 3'- -UGUCGU---------UGuCGUA---GCUCCAGCC-CGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 20403 | 0.74 | 0.242353 |
Target: 5'- gUAGCAAgGGCAUCGAGGUCuacccGGUCa -3' miRNA: 3'- uGUCGUUgUCGUAGCUCCAGc----CCGGc -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 60756 | 0.73 | 0.267952 |
Target: 5'- cAguGCAGuCGGCucggCGAGGUUGGGCUGc -3' miRNA: 3'- -UguCGUU-GUCGua--GCUCCAGCCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 54343 | 0.73 | 0.281551 |
Target: 5'- -gGGC--CAGCAUCGAgGGUCGGGCa- -3' miRNA: 3'- ugUCGuuGUCGUAGCU-CCAGCCCGgc -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 10345 | 0.71 | 0.366094 |
Target: 5'- uCGGCGGCAGCGggcUCGAcaUCGGGCuCGg -3' miRNA: 3'- uGUCGUUGUCGU---AGCUccAGCCCG-GC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 62744 | 0.7 | 0.40089 |
Target: 5'- cCGGCGGCAGUAcgCGGuGGUacucgUGGGCCGg -3' miRNA: 3'- uGUCGUUGUCGUa-GCU-CCA-----GCCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 2157 | 0.7 | 0.404484 |
Target: 5'- -uGGcCAGCGGCGUCGAgccgccgguugccgaGGUCauGGGCCGc -3' miRNA: 3'- ugUC-GUUGUCGUAGCU---------------CCAG--CCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 61567 | 0.7 | 0.428331 |
Target: 5'- cACGGCAcCGGCAgUUGAGGaucucaugcggUGGGCCGg -3' miRNA: 3'- -UGUCGUuGUCGU-AGCUCCa----------GCCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 41855 | 0.7 | 0.436777 |
Target: 5'- gACGGUgucccacucgacgGGCAGCAcCGuGG-CGGGCCGa -3' miRNA: 3'- -UGUCG-------------UUGUCGUaGCuCCaGCCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 48448 | 0.69 | 0.453952 |
Target: 5'- gGCAGCGGCAGCG-CGuuccaccgcgcgccGGGUCGcgucGGCCu -3' miRNA: 3'- -UGUCGUUGUCGUaGC--------------UCCAGC----CCGGc -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 23290 | 0.69 | 0.45685 |
Target: 5'- cGCGGUggUugGGUAUCGGGGUCcGGCgCGg -3' miRNA: 3'- -UGUCGuuG--UCGUAGCUCCAGcCCG-GC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 58553 | 0.69 | 0.45685 |
Target: 5'- -aGGUuACGGC-UCGGgcGGUUGGGCCGg -3' miRNA: 3'- ugUCGuUGUCGuAGCU--CCAGCCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 46401 | 0.69 | 0.466581 |
Target: 5'- cGCGGUGAgGGCAUCGAaacCGGGCUGu -3' miRNA: 3'- -UGUCGUUgUCGUAGCUccaGCCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 10757 | 0.68 | 0.503475 |
Target: 5'- -gGGCGAUcaucaugucgggcgGGuCAUCGAGGU-GGGCCGc -3' miRNA: 3'- ugUCGUUG--------------UC-GUAGCUCCAgCCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 17824 | 0.68 | 0.516739 |
Target: 5'- uCAGCGAgGcCAUCGAcGGgUGGGCCGa -3' miRNA: 3'- uGUCGUUgUcGUAGCU-CCaGCCCGGC- -5' |
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23432 | 5' | -57.3 | NC_005259.1 | + | 62860 | 0.68 | 0.527037 |
Target: 5'- aGCAGCcgcuCGGCG-CGAGGUa-GGCCGc -3' miRNA: 3'- -UGUCGuu--GUCGUaGCUCCAgcCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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