miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23432 5' -57.3 NC_005259.1 + 2157 0.7 0.404484
Target:  5'- -uGGcCAGCGGCGUCGAgccgccgguugccgaGGUCauGGGCCGc -3'
miRNA:   3'- ugUC-GUUGUCGUAGCU---------------CCAG--CCCGGC- -5'
23432 5' -57.3 NC_005259.1 + 8372 0.67 0.568922
Target:  5'- gGCGGCGGCcucGGCAUCGGcgagagccucGGcgagcCGGGCCa -3'
miRNA:   3'- -UGUCGUUG---UCGUAGCU----------CCa----GCCCGGc -5'
23432 5' -57.3 NC_005259.1 + 8741 0.77 0.159685
Target:  5'- -aGGCAGuCAGCccGUCGAGGUCGaGGCCc -3'
miRNA:   3'- ugUCGUU-GUCG--UAGCUCCAGC-CCGGc -5'
23432 5' -57.3 NC_005259.1 + 9171 0.75 0.213254
Target:  5'- cCGGUGGCAGCcgaugcaaugGUCGAGGUCgucauacgGGGCCGg -3'
miRNA:   3'- uGUCGUUGUCG----------UAGCUCCAG--------CCCGGC- -5'
23432 5' -57.3 NC_005259.1 + 10345 0.71 0.366094
Target:  5'- uCGGCGGCAGCGggcUCGAcaUCGGGCuCGg -3'
miRNA:   3'- uGUCGUUGUCGU---AGCUccAGCCCG-GC- -5'
23432 5' -57.3 NC_005259.1 + 10757 0.68 0.503475
Target:  5'- -gGGCGAUcaucaugucgggcgGGuCAUCGAGGU-GGGCCGc -3'
miRNA:   3'- ugUCGUUG--------------UC-GUAGCUCCAgCCCGGC- -5'
23432 5' -57.3 NC_005259.1 + 17824 0.68 0.516739
Target:  5'- uCAGCGAgGcCAUCGAcGGgUGGGCCGa -3'
miRNA:   3'- uGUCGUUgUcGUAGCU-CCaGCCCGGC- -5'
23432 5' -57.3 NC_005259.1 + 20403 0.74 0.242353
Target:  5'- gUAGCAAgGGCAUCGAGGUCuacccGGUCa -3'
miRNA:   3'- uGUCGUUgUCGUAGCUCCAGc----CCGGc -5'
23432 5' -57.3 NC_005259.1 + 23290 0.69 0.45685
Target:  5'- cGCGGUggUugGGUAUCGGGGUCcGGCgCGg -3'
miRNA:   3'- -UGUCGuuG--UCGUAGCUCCAGcCCG-GC- -5'
23432 5' -57.3 NC_005259.1 + 26674 0.68 0.527037
Target:  5'- cCGGCGGCAGCccgcccAUCGAGG-CGGGgaacUCGg -3'
miRNA:   3'- uGUCGUUGUCG------UAGCUCCaGCCC----GGC- -5'
23432 5' -57.3 NC_005259.1 + 28942 0.74 0.242353
Target:  5'- gGCGGCAcgauccugcGCcGCAUcgcCGAGGUCGGuGCCGa -3'
miRNA:   3'- -UGUCGU---------UGuCGUA---GCUCCAGCC-CGGC- -5'
23432 5' -57.3 NC_005259.1 + 30456 0.66 0.662009
Target:  5'- uCAGCuacgugcucgaucaAGCAGCcUCGAGGUa-GGCCa -3'
miRNA:   3'- uGUCG--------------UUGUCGuAGCUCCAgcCCGGc -5'
23432 5' -57.3 NC_005259.1 + 34545 0.67 0.600872
Target:  5'- gGCAGCcuCAGC-UUGccGUCGgGGCCGa -3'
miRNA:   3'- -UGUCGuuGUCGuAGCucCAGC-CCGGC- -5'
23432 5' -57.3 NC_005259.1 + 35613 0.68 0.53741
Target:  5'- -uGGCcacGCuGCGUCGAGuaguUCGGGCCGc -3'
miRNA:   3'- ugUCGu--UGuCGUAGCUCc---AGCCCGGC- -5'
23432 5' -57.3 NC_005259.1 + 41855 0.7 0.436777
Target:  5'- gACGGUgucccacucgacgGGCAGCAcCGuGG-CGGGCCGa -3'
miRNA:   3'- -UGUCG-------------UUGUCGUaGCuCCaGCCCGGC- -5'
23432 5' -57.3 NC_005259.1 + 42519 0.67 0.605154
Target:  5'- cCAGCAGCcguccggccccgaugGGCAcCGAGGUggCGGGCa- -3'
miRNA:   3'- uGUCGUUG---------------UCGUaGCUCCA--GCCCGgc -5'
23432 5' -57.3 NC_005259.1 + 46401 0.69 0.466581
Target:  5'- cGCGGUGAgGGCAUCGAaacCGGGCUGu -3'
miRNA:   3'- -UGUCGUUgUCGUAGCUccaGCCCGGC- -5'
23432 5' -57.3 NC_005259.1 + 47160 0.67 0.621239
Target:  5'- cGCAGCAGaucaccgUAGCggCGaAGGUCGGcgguGCCGu -3'
miRNA:   3'- -UGUCGUU-------GUCGuaGC-UCCAGCC----CGGC- -5'
23432 5' -57.3 NC_005259.1 + 48448 0.69 0.453952
Target:  5'- gGCAGCGGCAGCG-CGuuccaccgcgcgccGGGUCGcgucGGCCu -3'
miRNA:   3'- -UGUCGUUGUCGUaGC--------------UCCAGC----CCGGc -5'
23432 5' -57.3 NC_005259.1 + 50435 0.66 0.643786
Target:  5'- -gGGCAGCGGUGcgggcUCGGGGUCGccGGUCu -3'
miRNA:   3'- ugUCGUUGUCGU-----AGCUCCAGC--CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.