Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23435 | 5' | -54.6 | NC_005259.1 | + | 18330 | 0.67 | 0.770254 |
Target: 5'- aGGCCGGUgcguucGUgGUCGACGCCGaCGg-- -3' miRNA: 3'- -CCGGUCG------CAgCAGUUGUGGCgGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 5716 | 0.67 | 0.770254 |
Target: 5'- aGGCCAGCGcCG--GACGgCgGCCAUUc -3' miRNA: 3'- -CCGGUCGCaGCagUUGU-GgCGGUAAc -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 56764 | 0.67 | 0.770254 |
Target: 5'- uGGCCcaucGGgGacCGcUUGACACCGCCGUUGc -3' miRNA: 3'- -CCGG----UCgCa-GC-AGUUGUGGCGGUAAC- -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 27054 | 0.67 | 0.770254 |
Target: 5'- uGGCCugAGCGaCGgucacggCGACAUCGCCGa-- -3' miRNA: 3'- -CCGG--UCGCaGCa------GUUGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 8027 | 0.67 | 0.770254 |
Target: 5'- cGGCCAccccguuucGCGaacUGUcCGACACCGCCGg-- -3' miRNA: 3'- -CCGGU---------CGCa--GCA-GUUGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 7658 | 0.67 | 0.770254 |
Target: 5'- cGCCGuCGUCGUgAGCGCCccGCCucgUGg -3' miRNA: 3'- cCGGUcGCAGCAgUUGUGG--CGGua-AC- -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 66262 | 0.67 | 0.780166 |
Target: 5'- cGGCCcGCGcCGggcggCGgcucACGCCGCCAc-- -3' miRNA: 3'- -CCGGuCGCaGCa----GU----UGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 48054 | 0.67 | 0.780166 |
Target: 5'- uGGCCacGGCGgg--UAGCGCCGCCGc-- -3' miRNA: 3'- -CCGG--UCGCagcaGUUGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 56708 | 0.68 | 0.680433 |
Target: 5'- uGGCCAcgaugguguccccgaGCG-CGUCGACGuauCCGCCAc-- -3' miRNA: 3'- -CCGGU---------------CGCaGCAGUUGU---GGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 61599 | 0.68 | 0.723042 |
Target: 5'- gGGCCGGUgggGUCGgCGgggaacagcagaccgGCACCGCCGa-- -3' miRNA: 3'- -CCGGUCG---CAGCaGU---------------UGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 26239 | 0.68 | 0.697601 |
Target: 5'- gGGCCAGCGUCGUgAcCA-UGUCGUa- -3' miRNA: 3'- -CCGGUCGCAGCAgUuGUgGCGGUAac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 46571 | 0.68 | 0.686887 |
Target: 5'- uGGUCgcGGCGUCGaCcGCGCCGCCc--- -3' miRNA: 3'- -CCGG--UCGCAGCaGuUGUGGCGGuaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 43658 | 0.68 | 0.686887 |
Target: 5'- cGCCgacGGUGUCGUUGccgaucACACCGCCGc-- -3' miRNA: 3'- cCGG---UCGCAGCAGU------UGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 58297 | 0.68 | 0.686887 |
Target: 5'- aGGCCAGCG-----GAUACCGCCAcggUUGa -3' miRNA: 3'- -CCGGUCGCagcagUUGUGGCGGU---AAC- -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 8989 | 0.68 | 0.676122 |
Target: 5'- uGCCAGCGgCGaCGGCAgCCGCCu--- -3' miRNA: 3'- cCGGUCGCaGCaGUUGU-GGCGGuaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 36021 | 0.69 | 0.643623 |
Target: 5'- uGGCCAGCGagGUCGACAUgaucagcgagGCCAc-- -3' miRNA: 3'- -CCGGUCGCagCAGUUGUGg---------CGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 3679 | 0.69 | 0.632757 |
Target: 5'- aGCCAGa-UCGUCAcCGCCGCCc--- -3' miRNA: 3'- cCGGUCgcAGCAGUuGUGGCGGuaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 26023 | 0.69 | 0.632757 |
Target: 5'- uGGCCgcaAGCGggUUGgccagCAGCGCCGCCggGUUGg -3' miRNA: 3'- -CCGG---UCGC--AGCa----GUUGUGGCGG--UAAC- -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 44982 | 0.69 | 0.665316 |
Target: 5'- gGGCCGGUG-CGacugccgaGGCACCGCCGa-- -3' miRNA: 3'- -CCGGUCGCaGCag------UUGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 45306 | 0.69 | 0.65448 |
Target: 5'- cGCCGGUGaCGcCGAgGCCGCCGc-- -3' miRNA: 3'- cCGGUCGCaGCaGUUgUGGCGGUaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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