miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23435 5' -54.6 NC_005259.1 + 26779 0.7 0.600191
Target:  5'- cGCCGGUGccUCGgaacacCAGCGCCGCCGc-- -3'
miRNA:   3'- cCGGUCGC--AGCa-----GUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 27054 0.67 0.770254
Target:  5'- uGGCCugAGCGaCGgucacggCGACAUCGCCGa-- -3'
miRNA:   3'- -CCGG--UCGCaGCa------GUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 27476 0.69 0.611031
Target:  5'- gGGCCGGgGUCGgugUGGcCACCGCCc--- -3'
miRNA:   3'- -CCGGUCgCAGCa--GUU-GUGGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 28635 0.7 0.589377
Target:  5'- aGGCCAcCGgUGcCGACACCGCCGa-- -3'
miRNA:   3'- -CCGGUcGCaGCaGUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 30771 0.66 0.818211
Target:  5'- cGCCGGUGg---CAcCGCUGCCGUUGu -3'
miRNA:   3'- cCGGUCGCagcaGUuGUGGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 31183 0.66 0.818211
Target:  5'- aGCCAGuCGgCGagGAUGCCGCCGa-- -3'
miRNA:   3'- cCGGUC-GCaGCagUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 31628 0.71 0.53599
Target:  5'- cGCCAGCG-CGUUGuACugCGCCAc-- -3'
miRNA:   3'- cCGGUCGCaGCAGU-UGugGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 32343 0.67 0.73973
Target:  5'- cGGCCAucaacGCGagGUUGAUgACCGCCGUg- -3'
miRNA:   3'- -CCGGU-----CGCagCAGUUG-UGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 35613 0.67 0.750025
Target:  5'- uGGCCAcgcuGCGUCGaguaguUCGGgcCGCCGCCGc-- -3'
miRNA:   3'- -CCGGU----CGCAGC------AGUU--GUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 35665 0.66 0.803323
Target:  5'- uGGCCAGCG-CGgugguggugcacagCGACGCCGUg---- -3'
miRNA:   3'- -CCGGUCGCaGCa-------------GUUGUGGCGguaac -5'
23435 5' -54.6 NC_005259.1 + 36021 0.69 0.643623
Target:  5'- uGGCCAGCGagGUCGACAUgaucagcgagGCCAc-- -3'
miRNA:   3'- -CCGGUCGCagCAGUUGUGg---------CGGUaac -5'
23435 5' -54.6 NC_005259.1 + 36237 0.77 0.245134
Target:  5'- uGGCCAGCGcgagcgccugCGUCGGCAgCGCCAc-- -3'
miRNA:   3'- -CCGGUCGCa---------GCAGUUGUgGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 37236 0.66 0.82727
Target:  5'- uGGCCcGUGcCGgaUUGGCuGCCGCCGUUGc -3'
miRNA:   3'- -CCGGuCGCaGC--AGUUG-UGGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 37402 0.71 0.49453
Target:  5'- cGCCcauGGUGUUGUUGACGCCGCCc--- -3'
miRNA:   3'- cCGG---UCGCAGCAGUUGUGGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 37971 0.66 0.818211
Target:  5'- uGGUCGGCaGUgCGUCGuACugCGCCu--- -3'
miRNA:   3'- -CCGGUCG-CA-GCAGU-UGugGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 40455 0.67 0.750025
Target:  5'- uGCCGGUGUgGUUGACguACUGCCGg-- -3'
miRNA:   3'- cCGGUCGCAgCAGUUG--UGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 42937 0.7 0.578598
Target:  5'- aGGCCcuCGcCGUgGGCgagGCCGCCGUUGu -3'
miRNA:   3'- -CCGGucGCaGCAgUUG---UGGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 43658 0.68 0.686887
Target:  5'- cGCCgacGGUGUCGUUGccgaucACACCGCCGc-- -3'
miRNA:   3'- cCGG---UCGCAGCAGU------UGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 44982 0.69 0.665316
Target:  5'- gGGCCGGUG-CGacugccgaGGCACCGCCGa-- -3'
miRNA:   3'- -CCGGUCGCaGCag------UUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 45306 0.69 0.65448
Target:  5'- cGCCGGUGaCGcCGAgGCCGCCGc-- -3'
miRNA:   3'- cCGGUCGCaGCaGUUgUGGCGGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.