miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23435 5' -54.6 NC_005259.1 + 2157 0.79 0.179035
Target:  5'- uGGCCAGCGgCGUCGA-GCCGCCGg-- -3'
miRNA:   3'- -CCGGUCGCaGCAGUUgUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 3132 0.71 0.53599
Target:  5'- uGGgCAGCGga--CGGCACCGCCcgUGg -3'
miRNA:   3'- -CCgGUCGCagcaGUUGUGGCGGuaAC- -5'
23435 5' -54.6 NC_005259.1 + 3308 0.66 0.818211
Target:  5'- cGGCgAGCGcugCGUCGACGugagCGCCGg-- -3'
miRNA:   3'- -CCGgUCGCa--GCAGUUGUg---GCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 3679 0.69 0.632757
Target:  5'- aGCCAGa-UCGUCAcCGCCGCCc--- -3'
miRNA:   3'- cCGGUCgcAGCAGUuGUGGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 4565 0.67 0.754111
Target:  5'- aGGUCAcGCcgaUCGUCGgcacguuccccgacaACACCGCCAUa- -3'
miRNA:   3'- -CCGGU-CGc--AGCAGU---------------UGUGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 5716 0.67 0.770254
Target:  5'- aGGCCAGCGcCG--GACGgCgGCCAUUc -3'
miRNA:   3'- -CCGGUCGCaGCagUUGU-GgCGGUAAc -5'
23435 5' -54.6 NC_005259.1 + 7658 0.67 0.770254
Target:  5'- cGCCGuCGUCGUgAGCGCCccGCCucgUGg -3'
miRNA:   3'- cCGGUcGCAGCAgUUGUGG--CGGua-AC- -5'
23435 5' -54.6 NC_005259.1 + 8027 0.67 0.770254
Target:  5'- cGGCCAccccguuucGCGaacUGUcCGACACCGCCGg-- -3'
miRNA:   3'- -CCGGU---------CGCa--GCA-GUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 8560 0.71 0.515091
Target:  5'- aGCCcauGCGcCG-CAGCACCGCCAc-- -3'
miRNA:   3'- cCGGu--CGCaGCaGUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 8989 0.68 0.676122
Target:  5'- uGCCAGCGgCGaCGGCAgCCGCCu--- -3'
miRNA:   3'- cCGGUCGCaGCaGUUGU-GGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 9516 0.67 0.729329
Target:  5'- cGUCGcGCG-CGUCGAcCGCCGCCGg-- -3'
miRNA:   3'- cCGGU-CGCaGCAGUU-GUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 10269 0.66 0.82727
Target:  5'- gGGCCGGUcucaggcaauGUCGUCGuCAUCGagGUUGg -3'
miRNA:   3'- -CCGGUCG----------CAGCAGUuGUGGCggUAAC- -5'
23435 5' -54.6 NC_005259.1 + 14246 0.71 0.503738
Target:  5'- gGGCCGggcaacgacgaccGUGUCGUCAccccgucgACACCGCCu--- -3'
miRNA:   3'- -CCGGU-------------CGCAGCAGU--------UGUGGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 17851 0.66 0.789928
Target:  5'- aGGCCAcccCGUgGUCAGCgauccuugaGCCGCUcgGUUGg -3'
miRNA:   3'- -CCGGUc--GCAgCAGUUG---------UGGCGG--UAAC- -5'
23435 5' -54.6 NC_005259.1 + 18330 0.67 0.770254
Target:  5'- aGGCCGGUgcguucGUgGUCGACGCCGaCGg-- -3'
miRNA:   3'- -CCGGUCG------CAgCAGUUGUGGCgGUaac -5'
23435 5' -54.6 NC_005259.1 + 22639 0.76 0.264553
Target:  5'- cGCC-GCGUCgGUCGACGCCGCCc--- -3'
miRNA:   3'- cCGGuCGCAG-CAGUUGUGGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 22987 0.66 0.818211
Target:  5'- -cCCGGUGUCG---ACGCCGCCGa-- -3'
miRNA:   3'- ccGGUCGCAGCaguUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 26023 0.69 0.632757
Target:  5'- uGGCCgcaAGCGggUUGgccagCAGCGCCGCCggGUUGg -3'
miRNA:   3'- -CCGG---UCGC--AGCa----GUUGUGGCGG--UAAC- -5'
23435 5' -54.6 NC_005259.1 + 26125 0.7 0.567863
Target:  5'- cGCCGGuCGcCGgucCGACGCCGCCGa-- -3'
miRNA:   3'- cCGGUC-GCaGCa--GUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 26239 0.68 0.697601
Target:  5'- gGGCCAGCGUCGUgAcCA-UGUCGUa- -3'
miRNA:   3'- -CCGGUCGCAGCAgUuGUgGCGGUAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.