miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23435 5' -54.6 NC_005259.1 + 53265 0.66 0.82727
Target:  5'- cGCCGcUGUCGcCggUGCCGCCAa-- -3'
miRNA:   3'- cCGGUcGCAGCaGuuGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 52584 0.71 0.515091
Target:  5'- cGGCCugAGCGUCGcCgAGCACCagcGCCGUa- -3'
miRNA:   3'- -CCGG--UCGCAGCaG-UUGUGG---CGGUAac -5'
23435 5' -54.6 NC_005259.1 + 3132 0.71 0.53599
Target:  5'- uGGgCAGCGga--CGGCACCGCCcgUGg -3'
miRNA:   3'- -CCgGUCGCagcaGUUGUGGCGGuaAC- -5'
23435 5' -54.6 NC_005259.1 + 31628 0.71 0.53599
Target:  5'- cGCCAGCG-CGUUGuACugCGCCAc-- -3'
miRNA:   3'- cCGGUCGCaGCAGU-UGugGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 26125 0.7 0.567863
Target:  5'- cGCCGGuCGcCGgucCGACGCCGCCGa-- -3'
miRNA:   3'- cCGGUC-GCaGCa--GUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 58866 0.7 0.567863
Target:  5'- cGCCGuCGUCGUCGucgccucgGCAUCGCCGUc- -3'
miRNA:   3'- cCGGUcGCAGCAGU--------UGUGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 42937 0.7 0.578598
Target:  5'- aGGCCcuCGcCGUgGGCgagGCCGCCGUUGu -3'
miRNA:   3'- -CCGGucGCaGCAgUUG---UGGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 28635 0.7 0.589377
Target:  5'- aGGCCAcCGgUGcCGACACCGCCGa-- -3'
miRNA:   3'- -CCGGUcGCaGCaGUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 58725 0.7 0.589377
Target:  5'- cGCCgggGGUGUCGUUGGCACCGgCAc-- -3'
miRNA:   3'- cCGG---UCGCAGCAGUUGUGGCgGUaac -5'
23435 5' -54.6 NC_005259.1 + 51492 0.71 0.515091
Target:  5'- cGCCGGgGauagGUCGACGCCGCCGa-- -3'
miRNA:   3'- cCGGUCgCag--CAGUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 8560 0.71 0.515091
Target:  5'- aGCCcauGCGcCG-CAGCACCGCCAc-- -3'
miRNA:   3'- cCGGu--CGCaGCaGUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 14246 0.71 0.503738
Target:  5'- gGGCCGggcaacgacgaccGUGUCGUCAccccgucgACACCGCCu--- -3'
miRNA:   3'- -CCGGU-------------CGCAGCAGU--------UGUGGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 36237 0.77 0.245134
Target:  5'- uGGCCAGCGcgagcgccugCGUCGGCAgCGCCAc-- -3'
miRNA:   3'- -CCGGUCGCa---------GCAGUUGUgGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 22639 0.76 0.264553
Target:  5'- cGCC-GCGUCgGUCGACGCCGCCc--- -3'
miRNA:   3'- cCGGuCGCAG-CAGUUGUGGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 58695 0.76 0.285201
Target:  5'- gGGUCGGC-UCGUCGcCGCCGCCGUc- -3'
miRNA:   3'- -CCGGUCGcAGCAGUuGUGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 60289 0.74 0.354689
Target:  5'- cGGCCAuCGUCGUCggUGCgGCCAc-- -3'
miRNA:   3'- -CCGGUcGCAGCAGuuGUGgCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 45645 0.74 0.38036
Target:  5'- cGCCGGUGccgcCGUgAACACCGCCGUc- -3'
miRNA:   3'- cCGGUCGCa---GCAgUUGUGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 53464 0.72 0.48439
Target:  5'- cGGCUGGCucGUCGUcCGGC-CCGCCGUa- -3'
miRNA:   3'- -CCGGUCG--CAGCA-GUUGuGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 53614 0.71 0.49453
Target:  5'- gGGUCAGCaggCGUCgAGCGgUGCCGUUGg -3'
miRNA:   3'- -CCGGUCGca-GCAG-UUGUgGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 37402 0.71 0.49453
Target:  5'- cGCCcauGGUGUUGUUGACGCCGCCc--- -3'
miRNA:   3'- cCGG---UCGCAGCAGUUGUGGCGGuaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.