Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23435 | 5' | -54.6 | NC_005259.1 | + | 2157 | 0.79 | 0.179035 |
Target: 5'- uGGCCAGCGgCGUCGA-GCCGCCGg-- -3' miRNA: 3'- -CCGGUCGCaGCAGUUgUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 36237 | 0.77 | 0.245134 |
Target: 5'- uGGCCAGCGcgagcgccugCGUCGGCAgCGCCAc-- -3' miRNA: 3'- -CCGGUCGCa---------GCAGUUGUgGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 22639 | 0.76 | 0.264553 |
Target: 5'- cGCC-GCGUCgGUCGACGCCGCCc--- -3' miRNA: 3'- cCGGuCGCAG-CAGUUGUGGCGGuaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 58695 | 0.76 | 0.285201 |
Target: 5'- gGGUCGGC-UCGUCGcCGCCGCCGUc- -3' miRNA: 3'- -CCGGUCGcAGCAGUuGUGGCGGUAac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 60289 | 0.74 | 0.354689 |
Target: 5'- cGGCCAuCGUCGUCggUGCgGCCAc-- -3' miRNA: 3'- -CCGGUcGCAGCAGuuGUGgCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 45645 | 0.74 | 0.38036 |
Target: 5'- cGCCGGUGccgcCGUgAACACCGCCGUc- -3' miRNA: 3'- cCGGUCGCa---GCAgUUGUGGCGGUAac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 53464 | 0.72 | 0.48439 |
Target: 5'- cGGCUGGCucGUCGUcCGGC-CCGCCGUa- -3' miRNA: 3'- -CCGGUCG--CAGCA-GUUGuGGCGGUAac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 53614 | 0.71 | 0.49453 |
Target: 5'- gGGUCAGCaggCGUCgAGCGgUGCCGUUGg -3' miRNA: 3'- -CCGGUCGca-GCAG-UUGUgGCGGUAAC- -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 37402 | 0.71 | 0.49453 |
Target: 5'- cGCCcauGGUGUUGUUGACGCCGCCc--- -3' miRNA: 3'- cCGG---UCGCAGCAGUUGUGGCGGuaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 14246 | 0.71 | 0.503738 |
Target: 5'- gGGCCGggcaacgacgaccGUGUCGUCAccccgucgACACCGCCu--- -3' miRNA: 3'- -CCGGU-------------CGCAGCAGU--------UGUGGCGGuaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 52584 | 0.71 | 0.515091 |
Target: 5'- cGGCCugAGCGUCGcCgAGCACCagcGCCGUa- -3' miRNA: 3'- -CCGG--UCGCAGCaG-UUGUGG---CGGUAac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 51492 | 0.71 | 0.515091 |
Target: 5'- cGCCGGgGauagGUCGACGCCGCCGa-- -3' miRNA: 3'- cCGGUCgCag--CAGUUGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 8560 | 0.71 | 0.515091 |
Target: 5'- aGCCcauGCGcCG-CAGCACCGCCAc-- -3' miRNA: 3'- cCGGu--CGCaGCaGUUGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 3132 | 0.71 | 0.53599 |
Target: 5'- uGGgCAGCGga--CGGCACCGCCcgUGg -3' miRNA: 3'- -CCgGUCGCagcaGUUGUGGCGGuaAC- -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 31628 | 0.71 | 0.53599 |
Target: 5'- cGCCAGCG-CGUUGuACugCGCCAc-- -3' miRNA: 3'- cCGGUCGCaGCAGU-UGugGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 26125 | 0.7 | 0.567863 |
Target: 5'- cGCCGGuCGcCGgucCGACGCCGCCGa-- -3' miRNA: 3'- cCGGUC-GCaGCa--GUUGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 58866 | 0.7 | 0.567863 |
Target: 5'- cGCCGuCGUCGUCGucgccucgGCAUCGCCGUc- -3' miRNA: 3'- cCGGUcGCAGCAGU--------UGUGGCGGUAac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 42937 | 0.7 | 0.578598 |
Target: 5'- aGGCCcuCGcCGUgGGCgagGCCGCCGUUGu -3' miRNA: 3'- -CCGGucGCaGCAgUUG---UGGCGGUAAC- -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 28635 | 0.7 | 0.589377 |
Target: 5'- aGGCCAcCGgUGcCGACACCGCCGa-- -3' miRNA: 3'- -CCGGUcGCaGCaGUUGUGGCGGUaac -5' |
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23435 | 5' | -54.6 | NC_005259.1 | + | 58725 | 0.7 | 0.589377 |
Target: 5'- cGCCgggGGUGUCGUUGGCACCGgCAc-- -3' miRNA: 3'- cCGG---UCGCAGCAGUUGUGGCgGUaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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