miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23435 5' -54.6 NC_005259.1 + 67975 0.66 0.799529
Target:  5'- cGCgCAGCGgCGUgGcCACCGCCGc-- -3'
miRNA:   3'- cCG-GUCGCaGCAgUuGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 67214 0.67 0.770254
Target:  5'- uGUCGGCGggGUCGAUGCCGaCCAc-- -3'
miRNA:   3'- cCGGUCGCagCAGUUGUGGC-GGUaac -5'
23435 5' -54.6 NC_005259.1 + 67076 0.69 0.65448
Target:  5'- gGGCCAGCGU----GACGCCGaccuuggcCCAUUGg -3'
miRNA:   3'- -CCGGUCGCAgcagUUGUGGC--------GGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 66262 0.67 0.780166
Target:  5'- cGGCCcGCGcCGggcggCGgcucACGCCGCCAc-- -3'
miRNA:   3'- -CCGGuCGCaGCa----GU----UGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 65111 0.66 0.799529
Target:  5'- cGGUCAGUG-CGUCAccgucggcGCACCGgCGg-- -3'
miRNA:   3'- -CCGGUCGCaGCAGU--------UGUGGCgGUaac -5'
23435 5' -54.6 NC_005259.1 + 61599 0.68 0.723042
Target:  5'- gGGCCGGUgggGUCGgCGgggaacagcagaccgGCACCGCCGa-- -3'
miRNA:   3'- -CCGGUCG---CAGCaGU---------------UGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 61078 0.66 0.789928
Target:  5'- cGGCauaGGCGUCGUCGGC-CUcgggcuuguugaGCCAg-- -3'
miRNA:   3'- -CCGg--UCGCAGCAGUUGuGG------------CGGUaac -5'
23435 5' -54.6 NC_005259.1 + 60506 0.69 0.611031
Target:  5'- cGCCGGUGUUGUCGuaguGCGCCaugGCCGg-- -3'
miRNA:   3'- cCGGUCGCAGCAGU----UGUGG---CGGUaac -5'
23435 5' -54.6 NC_005259.1 + 60289 0.74 0.354689
Target:  5'- cGGCCAuCGUCGUCggUGCgGCCAc-- -3'
miRNA:   3'- -CCGGUcGCAGCAGuuGUGgCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 58866 0.7 0.567863
Target:  5'- cGCCGuCGUCGUCGucgccucgGCAUCGCCGUc- -3'
miRNA:   3'- cCGGUcGCAGCAGU--------UGUGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 58725 0.7 0.589377
Target:  5'- cGCCgggGGUGUCGUUGGCACCGgCAc-- -3'
miRNA:   3'- cCGG---UCGCAGCAGUUGUGGCgGUaac -5'
23435 5' -54.6 NC_005259.1 + 58695 0.76 0.285201
Target:  5'- gGGUCGGC-UCGUCGcCGCCGCCGUc- -3'
miRNA:   3'- -CCGGUCGcAGCAGUuGUGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 58297 0.68 0.686887
Target:  5'- aGGCCAGCG-----GAUACCGCCAcggUUGa -3'
miRNA:   3'- -CCGGUCGCagcagUUGUGGCGGU---AAC- -5'
23435 5' -54.6 NC_005259.1 + 56764 0.67 0.770254
Target:  5'- uGGCCcaucGGgGacCGcUUGACACCGCCGUUGc -3'
miRNA:   3'- -CCGG----UCgCa-GC-AGUUGUGGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 56708 0.68 0.680433
Target:  5'- uGGCCAcgaugguguccccgaGCG-CGUCGACGuauCCGCCAc-- -3'
miRNA:   3'- -CCGGU---------------CGCaGCAGUUGU---GGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 53614 0.71 0.49453
Target:  5'- gGGUCAGCaggCGUCgAGCGgUGCCGUUGg -3'
miRNA:   3'- -CCGGUCGca-GCAG-UUGUgGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 53464 0.72 0.48439
Target:  5'- cGGCUGGCucGUCGUcCGGC-CCGCCGUa- -3'
miRNA:   3'- -CCGGUCG--CAGCA-GUUGuGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 53265 0.66 0.82727
Target:  5'- cGCCGcUGUCGcCggUGCCGCCAa-- -3'
miRNA:   3'- cCGGUcGCAGCaGuuGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 52584 0.71 0.515091
Target:  5'- cGGCCugAGCGUCGcCgAGCACCagcGCCGUa- -3'
miRNA:   3'- -CCGG--UCGCAGCaG-UUGUGG---CGGUAac -5'
23435 5' -54.6 NC_005259.1 + 51492 0.71 0.515091
Target:  5'- cGCCGGgGauagGUCGACGCCGCCGa-- -3'
miRNA:   3'- cCGGUCgCag--CAGUUGUGGCGGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.