miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23437 3' -60 NC_005259.1 + 3260 0.66 0.516465
Target:  5'- gUCGgCAuccuGCUCGGgugguuuccCGUCGCCGCCUc- -3'
miRNA:   3'- aAGCgGU----UGAGCC---------GCAGUGGCGGGag -5'
23437 3' -60 NC_005259.1 + 7263 0.68 0.36654
Target:  5'- -gCGCCAagaaacuGCUCGGC--UACCGCCC-Cg -3'
miRNA:   3'- aaGCGGU-------UGAGCCGcaGUGGCGGGaG- -5'
23437 3' -60 NC_005259.1 + 9697 0.68 0.401851
Target:  5'- gUCGCCGcucACUgGGC---ACCGUCCUCg -3'
miRNA:   3'- aAGCGGU---UGAgCCGcagUGGCGGGAG- -5'
23437 3' -60 NC_005259.1 + 12160 0.67 0.44772
Target:  5'- -cCGCCGA--CGGC---ACCGCCCUCg -3'
miRNA:   3'- aaGCGGUUgaGCCGcagUGGCGGGAG- -5'
23437 3' -60 NC_005259.1 + 12331 0.67 0.429018
Target:  5'- -cCGCCAGCUCa-CG-CACCGCcgCCUCg -3'
miRNA:   3'- aaGCGGUUGAGccGCaGUGGCG--GGAG- -5'
23437 3' -60 NC_005259.1 + 13002 0.68 0.393041
Target:  5'- gUUCGC--ACUCGGCuacGcCGCCGCCCg- -3'
miRNA:   3'- -AAGCGguUGAGCCG---CaGUGGCGGGag -5'
23437 3' -60 NC_005259.1 + 14285 0.68 0.392167
Target:  5'- -cCGCCugcccaaccaccgAugUCGGUGcguaUgGCCGCCCUCg -3'
miRNA:   3'- aaGCGG-------------UugAGCCGC----AgUGGCGGGAG- -5'
23437 3' -60 NC_005259.1 + 16652 0.69 0.334989
Target:  5'- -cCGCCGACaauuUCGGgGUgACCGCCUc- -3'
miRNA:   3'- aaGCGGUUG----AGCCgCAgUGGCGGGag -5'
23437 3' -60 NC_005259.1 + 17361 0.67 0.44772
Target:  5'- gUCGgCGGCUCGGCGcuggucguggUCgacugcgacacuGCCGCCCa- -3'
miRNA:   3'- aAGCgGUUGAGCCGC----------AG------------UGGCGGGag -5'
23437 3' -60 NC_005259.1 + 19058 0.67 0.419842
Target:  5'- -gCGCCaccgAugUCGGUGUCGCgGUCCg- -3'
miRNA:   3'- aaGCGG----UugAGCCGCAGUGgCGGGag -5'
23437 3' -60 NC_005259.1 + 21478 0.67 0.44772
Target:  5'- --aGCCGA-UCcGCGaacugCACCGCCCUCg -3'
miRNA:   3'- aagCGGUUgAGcCGCa----GUGGCGGGAG- -5'
23437 3' -60 NC_005259.1 + 22636 0.71 0.238407
Target:  5'- cUUCGCCGcgUCGGuCGaCGCCGCCCa- -3'
miRNA:   3'- -AAGCGGUugAGCC-GCaGUGGCGGGag -5'
23437 3' -60 NC_005259.1 + 27740 0.7 0.312101
Target:  5'- -gCGCCcGCUgcugcccaCGGUG-CAUCGCCCUCg -3'
miRNA:   3'- aaGCGGuUGA--------GCCGCaGUGGCGGGAG- -5'
23437 3' -60 NC_005259.1 + 29221 0.66 0.476595
Target:  5'- gUUCGCCAGcCUCGGCGcguuccugaUCAucCUGUCCaUCg -3'
miRNA:   3'- -AAGCGGUU-GAGCCGC---------AGU--GGCGGG-AG- -5'
23437 3' -60 NC_005259.1 + 32367 0.68 0.375802
Target:  5'- -cCGCCGugUagGGCGggCACUGCCCg- -3'
miRNA:   3'- aaGCGGUugAg-CCGCa-GUGGCGGGag -5'
23437 3' -60 NC_005259.1 + 36669 0.7 0.28346
Target:  5'- cUCGCCGccgccGC-CGGgGUCuugACCGUCCUCg -3'
miRNA:   3'- aAGCGGU-----UGaGCCgCAG---UGGCGGGAG- -5'
23437 3' -60 NC_005259.1 + 38640 0.68 0.410785
Target:  5'- -aCGCCGAgUUGGCGaacUCGCCGaaaucgaccaCCUCg -3'
miRNA:   3'- aaGCGGUUgAGCCGC---AGUGGCg---------GGAG- -5'
23437 3' -60 NC_005259.1 + 40663 0.68 0.409886
Target:  5'- cUCGCCGAgcagcgcgagcgcCUUGGUGcUCACCGgCCCg- -3'
miRNA:   3'- aAGCGGUU-------------GAGCCGC-AGUGGC-GGGag -5'
23437 3' -60 NC_005259.1 + 42463 0.75 0.14562
Target:  5'- gUCGCCGACUaCGGCGagGCCcgGCCCg- -3'
miRNA:   3'- aAGCGGUUGA-GCCGCagUGG--CGGGag -5'
23437 3' -60 NC_005259.1 + 44637 0.7 0.30474
Target:  5'- -gCGCCuuGAC-CGGUGcCGCCGCCCg- -3'
miRNA:   3'- aaGCGG--UUGaGCCGCaGUGGCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.