miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23437 3' -60 NC_005259.1 + 68796 0.69 0.35908
Target:  5'- -aCGCCGGggCGGUGUCGgUGCCCg- -3'
miRNA:   3'- aaGCGGUUgaGCCGCAGUgGCGGGag -5'
23437 3' -60 NC_005259.1 + 68455 0.67 0.44772
Target:  5'- cUCGaCCAGCUUGGU--CACCGCCgUg -3'
miRNA:   3'- aAGC-GGUUGAGCCGcaGUGGCGGgAg -5'
23437 3' -60 NC_005259.1 + 68261 0.66 0.516465
Target:  5'- --aGCCuugcGCUCGuCGUaggCACCGUCCUCg -3'
miRNA:   3'- aagCGGu---UGAGCcGCA---GUGGCGGGAG- -5'
23437 3' -60 NC_005259.1 + 64431 0.72 0.221007
Target:  5'- aUCGCCGACgagcugcCGGgG-CGCUGCCCUUg -3'
miRNA:   3'- aAGCGGUUGa------GCCgCaGUGGCGGGAG- -5'
23437 3' -60 NC_005259.1 + 61150 0.66 0.476595
Target:  5'- -gUGCCGACUcaaggacaccgaCGGUGUaCGCCucgguaugGCCCUCg -3'
miRNA:   3'- aaGCGGUUGA------------GCCGCA-GUGG--------CGGGAG- -5'
23437 3' -60 NC_005259.1 + 58876 0.72 0.2047
Target:  5'- gUCGUCGcCUCGGCaUCGCCGUCgUCa -3'
miRNA:   3'- aAGCGGUuGAGCCGcAGUGGCGGgAG- -5'
23437 3' -60 NC_005259.1 + 58819 0.8 0.05728
Target:  5'- cUCGCgCuGCUCGGCacccUCGCCGCCCUCg -3'
miRNA:   3'- aAGCG-GuUGAGCCGc---AGUGGCGGGAG- -5'
23437 3' -60 NC_005259.1 + 58689 0.7 0.276632
Target:  5'- aUCGCgGGgUCGGCucGUCGCCGCCg-- -3'
miRNA:   3'- aAGCGgUUgAGCCG--CAGUGGCGGgag -5'
23437 3' -60 NC_005259.1 + 57125 0.66 0.49635
Target:  5'- cUCGCCca-UCGGCGggACCgagcaguagugGCCCUCc -3'
miRNA:   3'- aAGCGGuugAGCCGCagUGG-----------CGGGAG- -5'
23437 3' -60 NC_005259.1 + 56240 0.68 0.367376
Target:  5'- -cCGCCGACcacguugggaUCGGCGgccuugagcgcCGCCGCCCg- -3'
miRNA:   3'- aaGCGGUUG----------AGCCGCa----------GUGGCGGGag -5'
23437 3' -60 NC_005259.1 + 52370 0.67 0.466865
Target:  5'- aUCGCCGACUCaaGCGgCugCGCagccugCCUCg -3'
miRNA:   3'- aAGCGGUUGAGc-CGCaGugGCG------GGAG- -5'
23437 3' -60 NC_005259.1 + 50443 0.75 0.14562
Target:  5'- -gUGCgGGCUCGGgGUCGCCGgUCUCg -3'
miRNA:   3'- aaGCGgUUGAGCCgCAGUGGCgGGAG- -5'
23437 3' -60 NC_005259.1 + 50312 0.73 0.194417
Target:  5'- cUCGUCGuACUCGGCaacgagcucGUCGCgGCCCUUg -3'
miRNA:   3'- aAGCGGU-UGAGCCG---------CAGUGgCGGGAG- -5'
23437 3' -60 NC_005259.1 + 49421 0.69 0.327226
Target:  5'- -aUGCCAGCgagaaacCGGCGagCGCCGCCUUg -3'
miRNA:   3'- aaGCGGUUGa------GCCGCa-GUGGCGGGAg -5'
23437 3' -60 NC_005259.1 + 48528 0.66 0.486425
Target:  5'- -cUGCCGACuucUCGGCGcugUCGCCGgUCUUg -3'
miRNA:   3'- aaGCGGUUG---AGCCGC---AGUGGCgGGAG- -5'
23437 3' -60 NC_005259.1 + 47898 0.7 0.300388
Target:  5'- -gCGUCGGCUCguugagcgccuugauGGCGUCGCCgagGCCCUg -3'
miRNA:   3'- aaGCGGUUGAG---------------CCGCAGUGG---CGGGAg -5'
23437 3' -60 NC_005259.1 + 46554 0.74 0.172469
Target:  5'- gUCGCCGACcgcgccuauggucgCGGCGUCgaccgcGCCGCCCg- -3'
miRNA:   3'- aAGCGGUUGa-------------GCCGCAG------UGGCGGGag -5'
23437 3' -60 NC_005259.1 + 46230 0.66 0.486425
Target:  5'- aUUgGUCAGCUCGGCu--GCCGCCUg- -3'
miRNA:   3'- -AAgCGGUUGAGCCGcagUGGCGGGag -5'
23437 3' -60 NC_005259.1 + 45377 0.68 0.393041
Target:  5'- uUUUGCCcgaggaauuuCUCGGgGUCGCCGCCg-- -3'
miRNA:   3'- -AAGCGGuu--------GAGCCgCAGUGGCGGgag -5'
23437 3' -60 NC_005259.1 + 45005 0.7 0.276632
Target:  5'- -cCGCCGACcgcCGGgGccgCGCCGCCCUg -3'
miRNA:   3'- aaGCGGUUGa--GCCgCa--GUGGCGGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.