miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23437 5' -54.8 NC_005259.1 + 66937 0.66 0.837097
Target:  5'- aCCGGGGUgAGcggGACACCGG--CGaGCu -3'
miRNA:   3'- -GGUUCCAgUCa--CUGUGGCCuaGCcCG- -5'
23437 5' -54.8 NC_005259.1 + 49592 0.66 0.837097
Target:  5'- gCGGGGUCA---GCACCucGAccUCGGGCa -3'
miRNA:   3'- gGUUCCAGUcacUGUGGc-CU--AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 65544 0.66 0.837097
Target:  5'- aCCGAGGuacucgacaagaUCGGcccauaGACACCGaGGgaCGGGCg -3'
miRNA:   3'- -GGUUCC------------AGUCa-----CUGUGGC-CUa-GCCCG- -5'
23437 5' -54.8 NC_005259.1 + 58793 0.66 0.819467
Target:  5'- gUCGAGG-CGGUGAUugCcucggCGGGCu -3'
miRNA:   3'- -GGUUCCaGUCACUGugGccua-GCCCG- -5'
23437 5' -54.8 NC_005259.1 + 32895 0.66 0.819467
Target:  5'- aCCGGGGgcgagGGUGAgcCAcCCGGcccgcUCGGGCg -3'
miRNA:   3'- -GGUUCCag---UCACU--GU-GGCCu----AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 60570 0.66 0.810367
Target:  5'- gCCGAcGGUCAGgcGGCcCaCGGcgaGUCGGGUg -3'
miRNA:   3'- -GGUU-CCAGUCa-CUGuG-GCC---UAGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 12053 0.66 0.810367
Target:  5'- aCCGAGGccgagcucugCGGcaGACACCGaGAU-GGGCa -3'
miRNA:   3'- -GGUUCCa---------GUCa-CUGUGGC-CUAgCCCG- -5'
23437 5' -54.8 NC_005259.1 + 41622 0.66 0.809447
Target:  5'- gCGAGG-CugaccauGGUGGCgguGCCGGucugCGGGCg -3'
miRNA:   3'- gGUUCCaG-------UCACUG---UGGCCua--GCCCG- -5'
23437 5' -54.8 NC_005259.1 + 50406 0.66 0.801089
Target:  5'- gCCGAGcgcGcCGGUGcCuugACCGGcUCGGGCa -3'
miRNA:   3'- -GGUUC---CaGUCACuG---UGGCCuAGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 17469 0.66 0.801089
Target:  5'- cCCAccGU-GGUGACGcCCGGccaugCGGGCa -3'
miRNA:   3'- -GGUucCAgUCACUGU-GGCCua---GCCCG- -5'
23437 5' -54.8 NC_005259.1 + 10730 0.67 0.791644
Target:  5'- -uGAuGUCGGUGAUcaccgcgcgcuGCCGGGcgaucaucaugUCGGGCg -3'
miRNA:   3'- ggUUcCAGUCACUG-----------UGGCCU-----------AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 54331 0.67 0.791644
Target:  5'- cUCGGGGccaUCGGgccaGCAUCgaGGGUCGGGCa -3'
miRNA:   3'- -GGUUCC---AGUCac--UGUGG--CCUAGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 26817 0.67 0.762403
Target:  5'- gCCGGuaccGG-CGGUGGUGCCGGGgcggucugcUCGGGCa -3'
miRNA:   3'- -GGUU----CCaGUCACUGUGGCCU---------AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 58294 0.67 0.759411
Target:  5'- gCGAGGcCAGcgGAUACCGccacgguugaugguGAucUCGGGCa -3'
miRNA:   3'- gGUUCCaGUCa-CUGUGGC--------------CU--AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 65108 0.67 0.752388
Target:  5'- gCAcGGUCAGUGcguCACCG--UCGGcGCa -3'
miRNA:   3'- gGUuCCAGUCACu--GUGGCcuAGCC-CG- -5'
23437 5' -54.8 NC_005259.1 + 34868 0.67 0.752388
Target:  5'- uCCuc-GUCGGUGccGgACCGGGgugccUCGGGCa -3'
miRNA:   3'- -GGuucCAGUCAC--UgUGGCCU-----AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 54081 0.68 0.742256
Target:  5'- -uGAGGUCGGUGGCgucgcgcaucACCGGGgucaacgUGaGGCu -3'
miRNA:   3'- ggUUCCAGUCACUG----------UGGCCUa------GC-CCG- -5'
23437 5' -54.8 NC_005259.1 + 40042 0.68 0.742256
Target:  5'- -uGAGGUCGccgGugAUCGGGUCGGucGCg -3'
miRNA:   3'- ggUUCCAGUca-CugUGGCCUAGCC--CG- -5'
23437 5' -54.8 NC_005259.1 + 31499 0.68 0.73202
Target:  5'- gCAGGGUCucaccGCGCCGGAcuugcuugaUCGGGg -3'
miRNA:   3'- gGUUCCAGucac-UGUGGCCU---------AGCCCg -5'
23437 5' -54.8 NC_005259.1 + 17355 0.68 0.721688
Target:  5'- gUCGAGGUCGGcggcucGGCGCUGG-UCGuGGUc -3'
miRNA:   3'- -GGUUCCAGUCa-----CUGUGGCCuAGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.