miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23437 5' -54.8 NC_005259.1 + 66937 0.66 0.837097
Target:  5'- aCCGGGGUgAGcggGACACCGG--CGaGCu -3'
miRNA:   3'- -GGUUCCAgUCa--CUGUGGCCuaGCcCG- -5'
23437 5' -54.8 NC_005259.1 + 65544 0.66 0.837097
Target:  5'- aCCGAGGuacucgacaagaUCGGcccauaGACACCGaGGgaCGGGCg -3'
miRNA:   3'- -GGUUCC------------AGUCa-----CUGUGGC-CUa-GCCCG- -5'
23437 5' -54.8 NC_005259.1 + 65108 0.67 0.752388
Target:  5'- gCAcGGUCAGUGcguCACCG--UCGGcGCa -3'
miRNA:   3'- gGUuCCAGUCACu--GUGGCcuAGCC-CG- -5'
23437 5' -54.8 NC_005259.1 + 64034 0.72 0.487114
Target:  5'- gCGAGGcCGGUGACcggaucuuucucuuGCCGGAUCagcacGGCg -3'
miRNA:   3'- gGUUCCaGUCACUG--------------UGGCCUAGc----CCG- -5'
23437 5' -54.8 NC_005259.1 + 63658 0.74 0.395443
Target:  5'- ---uGGcCGG-GACGCCGGAcaccUCGGGCa -3'
miRNA:   3'- gguuCCaGUCaCUGUGGCCU----AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 60570 0.66 0.810367
Target:  5'- gCCGAcGGUCAGgcGGCcCaCGGcgaGUCGGGUg -3'
miRNA:   3'- -GGUU-CCAGUCa-CUGuG-GCC---UAGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 59064 0.7 0.583392
Target:  5'- -aGGGGUCAGgcucuCACCGGccuuguggCGGGCa -3'
miRNA:   3'- ggUUCCAGUCacu--GUGGCCua------GCCCG- -5'
23437 5' -54.8 NC_005259.1 + 58793 0.66 0.819467
Target:  5'- gUCGAGG-CGGUGAUugCcucggCGGGCu -3'
miRNA:   3'- -GGUUCCaGUCACUGugGccua-GCCCG- -5'
23437 5' -54.8 NC_005259.1 + 58549 0.71 0.551701
Target:  5'- gUCGAGGUuacggcucgggCGGUuGgGCCGGAUCGcGGCg -3'
miRNA:   3'- -GGUUCCA-----------GUCAcUgUGGCCUAGC-CCG- -5'
23437 5' -54.8 NC_005259.1 + 58294 0.67 0.759411
Target:  5'- gCGAGGcCAGcgGAUACCGccacgguugaugguGAucUCGGGCa -3'
miRNA:   3'- gGUUCCaGUCa-CUGUGGC--------------CU--AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 58216 0.8 0.170396
Target:  5'- gUCAGGGUCAGUGGCcUCGaGcUCGGGCu -3'
miRNA:   3'- -GGUUCCAGUCACUGuGGC-CuAGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 57470 0.72 0.500171
Target:  5'- --cAGGcCGGUGGCACCGGAcacgUCGaGCg -3'
miRNA:   3'- gguUCCaGUCACUGUGGCCU----AGCcCG- -5'
23437 5' -54.8 NC_005259.1 + 57230 0.68 0.690229
Target:  5'- gUCGGGGUCGGaGAUccacgucguuGCCGGGaacaguccgUUGGGCg -3'
miRNA:   3'- -GGUUCCAGUCaCUG----------UGGCCU---------AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 54331 0.67 0.791644
Target:  5'- cUCGGGGccaUCGGgccaGCAUCgaGGGUCGGGCa -3'
miRNA:   3'- -GGUUCC---AGUCac--UGUGG--CCUAGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 54081 0.68 0.742256
Target:  5'- -uGAGGUCGGUGGCgucgcgcaucACCGGGgucaacgUGaGGCu -3'
miRNA:   3'- ggUUCCAGUCACUG----------UGGCCUa------GC-CCG- -5'
23437 5' -54.8 NC_005259.1 + 54008 0.68 0.711272
Target:  5'- gCCGGGGUCcaccAGcGACGCuCGGGcgCGGuGCg -3'
miRNA:   3'- -GGUUCCAG----UCaCUGUG-GCCUa-GCC-CG- -5'
23437 5' -54.8 NC_005259.1 + 52408 0.7 0.572779
Target:  5'- aUCGAGGUguG-GGCGCUcGAcUCGGGCg -3'
miRNA:   3'- -GGUUCCAguCaCUGUGGcCU-AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 50406 0.66 0.801089
Target:  5'- gCCGAGcgcGcCGGUGcCuugACCGGcUCGGGCa -3'
miRNA:   3'- -GGUUC---CaGUCACuG---UGGCCuAGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 49592 0.66 0.837097
Target:  5'- gCGGGGUCA---GCACCucGAccUCGGGCa -3'
miRNA:   3'- gGUUCCAGUcacUGUGGc-CU--AGCCCG- -5'
23437 5' -54.8 NC_005259.1 + 45850 0.73 0.413434
Target:  5'- aCCGGGGcCGGUGGgACCGGGcaugcCGGGg -3'
miRNA:   3'- -GGUUCCaGUCACUgUGGCCUa----GCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.