miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23443 5' -54.7 NC_005259.1 + 41873 0.85 0.064977
Target:  5'- gGGCAGCACCGUGGCGGGCcgauACGCAuGCg -3'
miRNA:   3'- gUUGUCGUGGCGCUGCUCG----UGUGU-CG- -5'
23443 5' -54.7 NC_005259.1 + 14044 0.81 0.127977
Target:  5'- gCGGCAGCGCaucgucgGCGACGAGaccaGCACGGCg -3'
miRNA:   3'- -GUUGUCGUGg------CGCUGCUCg---UGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 64613 0.8 0.150937
Target:  5'- uGACGGCGagCGCGACGGGCA-GCAGCg -3'
miRNA:   3'- gUUGUCGUg-GCGCUGCUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 11295 0.8 0.158956
Target:  5'- gGACGGUcgacgggcgugagGCCGaGACGGGCGCGCAGCu -3'
miRNA:   3'- gUUGUCG-------------UGGCgCUGCUCGUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 11001 0.78 0.21387
Target:  5'- gCAACGGCACCGCGcCGGaCGCGCcgaGGCa -3'
miRNA:   3'- -GUUGUCGUGGCGCuGCUcGUGUG---UCG- -5'
23443 5' -54.7 NC_005259.1 + 47761 0.77 0.231285
Target:  5'- aUAGCGGCugCGCGAUG-GCcuuuuggaaaucGCGCAGCg -3'
miRNA:   3'- -GUUGUCGugGCGCUGCuCG------------UGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 52181 0.77 0.231285
Target:  5'- gCAGCAGgACCGCGcCGAcaaCGCACGGCu -3'
miRNA:   3'- -GUUGUCgUGGCGCuGCUc--GUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 967 0.77 0.23735
Target:  5'- gCAACGGCucaACgGCGACGAGaCACcgGCAGCc -3'
miRNA:   3'- -GUUGUCG---UGgCGCUGCUC-GUG--UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 30315 0.76 0.249879
Target:  5'- aCGGCgAGCGCCGCGuCGuaccuGaCACGCAGCa -3'
miRNA:   3'- -GUUG-UCGUGGCGCuGCu----C-GUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 4277 0.76 0.28359
Target:  5'- gCGGCuGCGCUGCcACGAGCACGgacCGGCg -3'
miRNA:   3'- -GUUGuCGUGGCGcUGCUCGUGU---GUCG- -5'
23443 5' -54.7 NC_005259.1 + 14509 0.76 0.28359
Target:  5'- -cGCAuGCACaC-CGGCGAGCACGCGGUg -3'
miRNA:   3'- guUGU-CGUG-GcGCUGCUCGUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 3091 0.75 0.290749
Target:  5'- gAGCcGCGCaGCGAUGAGCGgGCGGCc -3'
miRNA:   3'- gUUGuCGUGgCGCUGCUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 3122 0.75 0.30549
Target:  5'- -cGCGGCACCGUGGgcAGCGgACGGCa -3'
miRNA:   3'- guUGUCGUGGCGCUgcUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 55421 0.75 0.312308
Target:  5'- aCAGCAGCACCGagcCGACGAcgccgacgaacgcGUACAgGGCc -3'
miRNA:   3'- -GUUGUCGUGGC---GCUGCU-------------CGUGUgUCG- -5'
23443 5' -54.7 NC_005259.1 + 14699 0.74 0.353112
Target:  5'- uCGACcccCGCCGCGACGAacaGCACGCcGCg -3'
miRNA:   3'- -GUUGuc-GUGGCGCUGCU---CGUGUGuCG- -5'
23443 5' -54.7 NC_005259.1 + 56436 0.73 0.378818
Target:  5'- gAGCAGCGa-GCGcCGGGcCACGCAGCu -3'
miRNA:   3'- gUUGUCGUggCGCuGCUC-GUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 34764 0.73 0.387661
Target:  5'- ---uGGCAUCGuCGGCGAGCAgCACuGCa -3'
miRNA:   3'- guugUCGUGGC-GCUGCUCGU-GUGuCG- -5'
23443 5' -54.7 NC_005259.1 + 51149 0.73 0.387661
Target:  5'- cCAugAGCgcguucggguugACCGUGGCGAGC-CACAGa -3'
miRNA:   3'- -GUugUCG------------UGGCGCUGCUCGuGUGUCg -5'
23443 5' -54.7 NC_005259.1 + 56656 0.72 0.421537
Target:  5'- uCGAgGGCACCGCGcgucACGGGCucguugcgccacccAUACGGCu -3'
miRNA:   3'- -GUUgUCGUGGCGC----UGCUCG--------------UGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 40883 0.72 0.424361
Target:  5'- uCAcCGGcCACCGUGGCGGGguCgGCAGCg -3'
miRNA:   3'- -GUuGUC-GUGGCGCUGCUCguG-UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.