Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23443 | 5' | -54.7 | NC_005259.1 | + | 41873 | 0.85 | 0.064977 |
Target: 5'- gGGCAGCACCGUGGCGGGCcgauACGCAuGCg -3' miRNA: 3'- gUUGUCGUGGCGCUGCUCG----UGUGU-CG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 14044 | 0.81 | 0.127977 |
Target: 5'- gCGGCAGCGCaucgucgGCGACGAGaccaGCACGGCg -3' miRNA: 3'- -GUUGUCGUGg------CGCUGCUCg---UGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 64613 | 0.8 | 0.150937 |
Target: 5'- uGACGGCGagCGCGACGGGCA-GCAGCg -3' miRNA: 3'- gUUGUCGUg-GCGCUGCUCGUgUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 11295 | 0.8 | 0.158956 |
Target: 5'- gGACGGUcgacgggcgugagGCCGaGACGGGCGCGCAGCu -3' miRNA: 3'- gUUGUCG-------------UGGCgCUGCUCGUGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 11001 | 0.78 | 0.21387 |
Target: 5'- gCAACGGCACCGCGcCGGaCGCGCcgaGGCa -3' miRNA: 3'- -GUUGUCGUGGCGCuGCUcGUGUG---UCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 52181 | 0.77 | 0.231285 |
Target: 5'- gCAGCAGgACCGCGcCGAcaaCGCACGGCu -3' miRNA: 3'- -GUUGUCgUGGCGCuGCUc--GUGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 47761 | 0.77 | 0.231285 |
Target: 5'- aUAGCGGCugCGCGAUG-GCcuuuuggaaaucGCGCAGCg -3' miRNA: 3'- -GUUGUCGugGCGCUGCuCG------------UGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 967 | 0.77 | 0.23735 |
Target: 5'- gCAACGGCucaACgGCGACGAGaCACcgGCAGCc -3' miRNA: 3'- -GUUGUCG---UGgCGCUGCUC-GUG--UGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 30315 | 0.76 | 0.249879 |
Target: 5'- aCGGCgAGCGCCGCGuCGuaccuGaCACGCAGCa -3' miRNA: 3'- -GUUG-UCGUGGCGCuGCu----C-GUGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 4277 | 0.76 | 0.28359 |
Target: 5'- gCGGCuGCGCUGCcACGAGCACGgacCGGCg -3' miRNA: 3'- -GUUGuCGUGGCGcUGCUCGUGU---GUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 14509 | 0.76 | 0.28359 |
Target: 5'- -cGCAuGCACaC-CGGCGAGCACGCGGUg -3' miRNA: 3'- guUGU-CGUG-GcGCUGCUCGUGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 3091 | 0.75 | 0.290749 |
Target: 5'- gAGCcGCGCaGCGAUGAGCGgGCGGCc -3' miRNA: 3'- gUUGuCGUGgCGCUGCUCGUgUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 3122 | 0.75 | 0.30549 |
Target: 5'- -cGCGGCACCGUGGgcAGCGgACGGCa -3' miRNA: 3'- guUGUCGUGGCGCUgcUCGUgUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 55421 | 0.75 | 0.312308 |
Target: 5'- aCAGCAGCACCGagcCGACGAcgccgacgaacgcGUACAgGGCc -3' miRNA: 3'- -GUUGUCGUGGC---GCUGCU-------------CGUGUgUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 14699 | 0.74 | 0.353112 |
Target: 5'- uCGACcccCGCCGCGACGAacaGCACGCcGCg -3' miRNA: 3'- -GUUGuc-GUGGCGCUGCU---CGUGUGuCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 56436 | 0.73 | 0.378818 |
Target: 5'- gAGCAGCGa-GCGcCGGGcCACGCAGCu -3' miRNA: 3'- gUUGUCGUggCGCuGCUC-GUGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 34764 | 0.73 | 0.387661 |
Target: 5'- ---uGGCAUCGuCGGCGAGCAgCACuGCa -3' miRNA: 3'- guugUCGUGGC-GCUGCUCGU-GUGuCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 51149 | 0.73 | 0.387661 |
Target: 5'- cCAugAGCgcguucggguugACCGUGGCGAGC-CACAGa -3' miRNA: 3'- -GUugUCG------------UGGCGCUGCUCGuGUGUCg -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 56656 | 0.72 | 0.421537 |
Target: 5'- uCGAgGGCACCGCGcgucACGGGCucguugcgccacccAUACGGCu -3' miRNA: 3'- -GUUgUCGUGGCGC----UGCUCG--------------UGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 40883 | 0.72 | 0.424361 |
Target: 5'- uCAcCGGcCACCGUGGCGGGguCgGCAGCg -3' miRNA: 3'- -GUuGUC-GUGGCGCUGCUCguG-UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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