miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23443 5' -54.7 NC_005259.1 + 967 0.77 0.23735
Target:  5'- gCAACGGCucaACgGCGACGAGaCACcgGCAGCc -3'
miRNA:   3'- -GUUGUCG---UGgCGCUGCUC-GUG--UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 2202 0.68 0.68638
Target:  5'- aCGGCaaGGUGCUGCGcacCGAGCGCcCGGCc -3'
miRNA:   3'- -GUUG--UCGUGGCGCu--GCUCGUGuGUCG- -5'
23443 5' -54.7 NC_005259.1 + 2247 0.7 0.58845
Target:  5'- gCGACAGCcgguACgGCGACGAGUucgacauCACcGCg -3'
miRNA:   3'- -GUUGUCG----UGgCGCUGCUCGu------GUGuCG- -5'
23443 5' -54.7 NC_005259.1 + 3091 0.75 0.290749
Target:  5'- gAGCcGCGCaGCGAUGAGCGgGCGGCc -3'
miRNA:   3'- gUUGuCGUGgCGCUGCUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 3122 0.75 0.30549
Target:  5'- -cGCGGCACCGUGGgcAGCGgACGGCa -3'
miRNA:   3'- guUGUCGUGGCGCUgcUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 3307 0.71 0.503529
Target:  5'- uCGGCgAGCGCUGCGucgacgUGAGCGCcggGCAGCu -3'
miRNA:   3'- -GUUG-UCGUGGCGCu-----GCUCGUG---UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 3513 0.66 0.780082
Target:  5'- -uGCGcCGCCGCGuucaACGGGCACgacaccgaccACAGCc -3'
miRNA:   3'- guUGUcGUGGCGC----UGCUCGUG----------UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 3995 0.71 0.524334
Target:  5'- gCGAUGGCggGCCGCGucccccgguUGAGCAgACAGCc -3'
miRNA:   3'- -GUUGUCG--UGGCGCu--------GCUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 4277 0.76 0.28359
Target:  5'- gCGGCuGCGCUGCcACGAGCACGgacCGGCg -3'
miRNA:   3'- -GUUGuCGUGGCGcUGCUCGUGU---GUCG- -5'
23443 5' -54.7 NC_005259.1 + 4354 0.69 0.610192
Target:  5'- gAugAGCGCCG-GACG-GCACGCccguGCc -3'
miRNA:   3'- gUugUCGUGGCgCUGCuCGUGUGu---CG- -5'
23443 5' -54.7 NC_005259.1 + 4442 0.67 0.718471
Target:  5'- gAGCcGC-CCGUG-CGAGUGgGCAGCg -3'
miRNA:   3'- gUUGuCGuGGCGCuGCUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 4650 0.72 0.463059
Target:  5'- -cGC-GCACCGCGccuACGGGCACGguGUc -3'
miRNA:   3'- guUGuCGUGGCGC---UGCUCGUGUguCG- -5'
23443 5' -54.7 NC_005259.1 + 5487 0.7 0.545459
Target:  5'- gCAAUAGCGCCgaGCGAggauCGAGCuACGCGcGCc -3'
miRNA:   3'- -GUUGUCGUGG--CGCU----GCUCG-UGUGU-CG- -5'
23443 5' -54.7 NC_005259.1 + 6534 0.69 0.621097
Target:  5'- aCAAcCGGCcUCGgGGCGAGCggugaagcuguGCGCGGCg -3'
miRNA:   3'- -GUU-GUCGuGGCgCUGCUCG-----------UGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 7173 0.68 0.653827
Target:  5'- aCGAgGGCACCG--GCGAGUGCcCGGCc -3'
miRNA:   3'- -GUUgUCGUGGCgcUGCUCGUGuGUCG- -5'
23443 5' -54.7 NC_005259.1 + 7236 0.69 0.630919
Target:  5'- aCGACGGCAgCCGCGccgguguCGAGUGCGCcaagaaacugcucGGCu -3'
miRNA:   3'- -GUUGUCGU-GGCGCu------GCUCGUGUG-------------UCG- -5'
23443 5' -54.7 NC_005259.1 + 7407 0.66 0.79953
Target:  5'- gCAACGGCauccucgucGCCGuCGGCGGugcccGCGCcgcaugGCAGCg -3'
miRNA:   3'- -GUUGUCG---------UGGC-GCUGCU-----CGUG------UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 7767 0.67 0.749806
Target:  5'- aCAACAGagaaACCcCGcCGAGCGCccCGGCg -3'
miRNA:   3'- -GUUGUCg---UGGcGCuGCUCGUGu-GUCG- -5'
23443 5' -54.7 NC_005259.1 + 8527 0.71 0.48309
Target:  5'- aCGACAGCcaauCgGCGAUGAGCu--CGGCg -3'
miRNA:   3'- -GUUGUCGu---GgCGCUGCUCGuguGUCG- -5'
23443 5' -54.7 NC_005259.1 + 8837 0.68 0.68638
Target:  5'- uGAC-GCGCUGCGcCGAcCAcCACAGCg -3'
miRNA:   3'- gUUGuCGUGGCGCuGCUcGU-GUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.