miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23447 3' -51.2 NC_005259.1 + 26816 0.67 0.914521
Target:  5'- gGCCGGUaccggcggUGGUGCcgggGCGGUCugCu-CGGg -3'
miRNA:   3'- -CGGUUA--------ACCGCG----UGCUAGugGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 63388 0.67 0.914521
Target:  5'- cGCCGA-UGGCcCACGccgACCAAUGGu -3'
miRNA:   3'- -CGGUUaACCGcGUGCuagUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 57285 0.67 0.908068
Target:  5'- aCCGG-UGGCaccucguaguGCACGAcaucgagCACCGGCGGu -3'
miRNA:   3'- cGGUUaACCG----------CGUGCUa------GUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 8284 0.67 0.908068
Target:  5'- aCCg---GGUGCGCGggCACCcgcACGGa -3'
miRNA:   3'- cGGuuaaCCGCGUGCuaGUGGu--UGCC- -5'
23447 3' -51.2 NC_005259.1 + 13411 0.67 0.908068
Target:  5'- gGCCuuccUGGC-CGgGGUCGCCGcCGGg -3'
miRNA:   3'- -CGGuua-ACCGcGUgCUAGUGGUuGCC- -5'
23447 3' -51.2 NC_005259.1 + 13820 0.68 0.887077
Target:  5'- aCCAcgUGuGCGU--GAUgACCGACGGg -3'
miRNA:   3'- cGGUuaAC-CGCGugCUAgUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 36225 0.68 0.871764
Target:  5'- uGCCGAgcaccUUGGCcaGCGCGAgCGCCuGCGu -3'
miRNA:   3'- -CGGUU-----AACCG--CGUGCUaGUGGuUGCc -5'
23447 3' -51.2 NC_005259.1 + 47148 0.68 0.871764
Target:  5'- gGCCAcaacGuGCGCAgcaGAUCACCGuaGCGGc -3'
miRNA:   3'- -CGGUuaa-C-CGCGUg--CUAGUGGU--UGCC- -5'
23447 3' -51.2 NC_005259.1 + 26629 0.68 0.866972
Target:  5'- aGCCGAUaucgauggccUGGCGUGCGcUCGgcagguucggcgcacCCGGCGGc -3'
miRNA:   3'- -CGGUUA----------ACCGCGUGCuAGU---------------GGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 43034 0.68 0.863729
Target:  5'- cGCCGAgcaGGcCGC-CGAgcagcgaACCGACGGg -3'
miRNA:   3'- -CGGUUaa-CC-GCGuGCUag-----UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 19853 0.68 0.863729
Target:  5'- cGCuCGGUgUGGCGCucgcgcccgccGgGAUCGCCGACGc -3'
miRNA:   3'- -CG-GUUA-ACCGCG-----------UgCUAGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 5451 0.68 0.863729
Target:  5'- cGCCGAcagauCGCAUGAgcagCACCAAUGGc -3'
miRNA:   3'- -CGGUUaacc-GCGUGCUa---GUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 13734 0.69 0.85292
Target:  5'- uGCCGugaUGGCcCGCGAgauaugccaagaccUCGCCGACGa -3'
miRNA:   3'- -CGGUua-ACCGcGUGCU--------------AGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 64215 0.69 0.852072
Target:  5'- cGCCGGUcGGCaGCcCGGUaucggggucgauaGCCGACGGg -3'
miRNA:   3'- -CGGUUAaCCG-CGuGCUAg------------UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 4511 0.69 0.838195
Target:  5'- cGCCGGgagUGGCGCugcGCGG-CACCc-CGGu -3'
miRNA:   3'- -CGGUUa--ACCGCG---UGCUaGUGGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 66193 0.69 0.838195
Target:  5'- uGCCGGUgcaguacgGGUcagGCGCGGUCgcGCCGACGc -3'
miRNA:   3'- -CGGUUAa-------CCG---CGUGCUAG--UGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 22771 0.69 0.830141
Target:  5'- cGCCAA--GGCGCugGucacugugcaggugcUCACCGAgGGu -3'
miRNA:   3'- -CGGUUaaCCGCGugCu--------------AGUGGUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 65175 0.7 0.8107
Target:  5'- cGCCGGgucaaGGCGCugguCGAUCAgauCCggUGGg -3'
miRNA:   3'- -CGGUUaa---CCGCGu---GCUAGU---GGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 43326 0.7 0.791408
Target:  5'- gGCCAccgccUUGGCgauggGCACGAUCACCuuuuCGa -3'
miRNA:   3'- -CGGUu----AACCG-----CGUGCUAGUGGuu--GCc -5'
23447 3' -51.2 NC_005259.1 + 44931 0.7 0.791408
Target:  5'- cGCUGAUcgGGUcCAUGG-CACCAGCGGg -3'
miRNA:   3'- -CGGUUAa-CCGcGUGCUaGUGGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.