miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23447 3' -51.2 NC_005259.1 + 26629 0.68 0.866972
Target:  5'- aGCCGAUaucgauggccUGGCGUGCGcUCGgcagguucggcgcacCCGGCGGc -3'
miRNA:   3'- -CGGUUA----------ACCGCGUGCuAGU---------------GGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 26816 0.67 0.914521
Target:  5'- gGCCGGUaccggcggUGGUGCcgggGCGGUCugCu-CGGg -3'
miRNA:   3'- -CGGUUA--------ACCGCG----UGCUAGugGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 27354 0.7 0.781506
Target:  5'- cGCCGuacugaucgGGCuuggugcccgGCACGGUgACCGGCGGc -3'
miRNA:   3'- -CGGUuaa------CCG----------CGUGCUAgUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 28019 0.67 0.914521
Target:  5'- cGCCGGgguuGCGCGCGuUgGCCAgccACGGc -3'
miRNA:   3'- -CGGUUaac-CGCGUGCuAgUGGU---UGCC- -5'
23447 3' -51.2 NC_005259.1 + 28931 0.66 0.951925
Target:  5'- aGCCAGaagcaGGCgGCACGAuccugcgccgcaUCGCCGAgguCGGu -3'
miRNA:   3'- -CGGUUaa---CCG-CGUGCU------------AGUGGUU---GCC- -5'
23447 3' -51.2 NC_005259.1 + 29960 0.71 0.750909
Target:  5'- gGCUggUggGGCGgGCGGUgACCGuccaACGGa -3'
miRNA:   3'- -CGGuuAa-CCGCgUGCUAgUGGU----UGCC- -5'
23447 3' -51.2 NC_005259.1 + 32330 0.73 0.6317
Target:  5'- cGCCAAUU-GUGCGCGGcCAUCAACGc -3'
miRNA:   3'- -CGGUUAAcCGCGUGCUaGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 36225 0.68 0.871764
Target:  5'- uGCCGAgcaccUUGGCcaGCGCGAgCGCCuGCGu -3'
miRNA:   3'- -CGGUU-----AACCG--CGUGCUaGUGGuUGCc -5'
23447 3' -51.2 NC_005259.1 + 38760 0.67 0.914521
Target:  5'- gGCCGGUgaGCuGCGCGAUCAugUCGGCGa -3'
miRNA:   3'- -CGGUUAacCG-CGUGCUAGU--GGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 40122 0.73 0.6317
Target:  5'- cGCUcguggAAUUGGCGgGCGAgcUCGCCGuCGGu -3'
miRNA:   3'- -CGG-----UUAACCGCgUGCU--AGUGGUuGCC- -5'
23447 3' -51.2 NC_005259.1 + 43034 0.68 0.863729
Target:  5'- cGCCGAgcaGGcCGC-CGAgcagcgaACCGACGGg -3'
miRNA:   3'- -CGGUUaa-CC-GCGuGCUag-----UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 43326 0.7 0.791408
Target:  5'- gGCCAccgccUUGGCgauggGCACGAUCACCuuuuCGa -3'
miRNA:   3'- -CGGUu----AACCG-----CGUGCUAGUGGuu--GCc -5'
23447 3' -51.2 NC_005259.1 + 43784 0.66 0.956174
Target:  5'- cGCCGGgcaUGaGCaGCGCGggCACCGAguccuugcCGGg -3'
miRNA:   3'- -CGGUUa--AC-CG-CGUGCuaGUGGUU--------GCC- -5'
23447 3' -51.2 NC_005259.1 + 44931 0.7 0.791408
Target:  5'- cGCUGAUcgGGUcCAUGG-CACCAGCGGg -3'
miRNA:   3'- -CGGUUAa-CCGcGUGCUaGUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 47081 0.67 0.926595
Target:  5'- cGCCGAgacgaugGGCaGCACGAucUCGCCccACGu -3'
miRNA:   3'- -CGGUUaa-----CCG-CGUGCU--AGUGGu-UGCc -5'
23447 3' -51.2 NC_005259.1 + 47148 0.68 0.871764
Target:  5'- gGCCAcaacGuGCGCAgcaGAUCACCGuaGCGGc -3'
miRNA:   3'- -CGGUuaa-C-CGCGUg--CUAGUGGU--UGCC- -5'
23447 3' -51.2 NC_005259.1 + 47943 0.66 0.956174
Target:  5'- aGCCGAUgacggcGGUGC-CGAUgGCCGccGCGc -3'
miRNA:   3'- -CGGUUAa-----CCGCGuGCUAgUGGU--UGCc -5'
23447 3' -51.2 NC_005259.1 + 48713 0.66 0.951925
Target:  5'- gGCUAucgcacgGGCGCGCGGaaacucguUUACgCAAUGGg -3'
miRNA:   3'- -CGGUuaa----CCGCGUGCU--------AGUG-GUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 49066 0.74 0.598596
Target:  5'- cGgCGGUUGGCGCAaggGAUCGCuCGAgGGu -3'
miRNA:   3'- -CgGUUAACCGCGUg--CUAGUG-GUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 49976 0.71 0.719215
Target:  5'- uGCgcAUUGcGCGCACgGAUCGCguGCGGa -3'
miRNA:   3'- -CGguUAAC-CGCGUG-CUAGUGguUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.