miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23447 3' -51.2 NC_005259.1 + 778 0.66 0.942618
Target:  5'- cGCCGAggcGGCugcccucgGUugGGUgGCCAAgGGg -3'
miRNA:   3'- -CGGUUaa-CCG--------CGugCUAgUGGUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 905 0.73 0.639434
Target:  5'- aCCGAggUGGUGCccgGCGAUCACCugcugcugcgcgacAGCGGa -3'
miRNA:   3'- cGGUUa-ACCGCG---UGCUAGUGG--------------UUGCC- -5'
23447 3' -51.2 NC_005259.1 + 2011 0.74 0.587607
Target:  5'- gGCCAucgggUGGCGCACcggCACCucaguGCGGu -3'
miRNA:   3'- -CGGUua---ACCGCGUGcuaGUGGu----UGCC- -5'
23447 3' -51.2 NC_005259.1 + 2110 0.78 0.367103
Target:  5'- gGCCAAUUGGCaCACGcUCGCCGA-GGu -3'
miRNA:   3'- -CGGUUAACCGcGUGCuAGUGGUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 4511 0.69 0.838195
Target:  5'- cGCCGGgagUGGCGCugcGCGG-CACCc-CGGu -3'
miRNA:   3'- -CGGUUa--ACCGCG---UGCUaGUGGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 5451 0.68 0.863729
Target:  5'- cGCCGAcagauCGCAUGAgcagCACCAAUGGc -3'
miRNA:   3'- -CGGUUaacc-GCGUGCUa---GUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 6355 0.66 0.937555
Target:  5'- uGCCGuacGuGCGCACGuuGUCGCCGggcGCGa -3'
miRNA:   3'- -CGGUuaaC-CGCGUGC--UAGUGGU---UGCc -5'
23447 3' -51.2 NC_005259.1 + 6433 0.66 0.951925
Target:  5'- cGCCGAUgucGGCaccgucGCGCuGAUCGgCAGCGu -3'
miRNA:   3'- -CGGUUAa--CCG------CGUG-CUAGUgGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 6692 0.73 0.653787
Target:  5'- uCCAAgagUGGCGCgacACGAUCaACCGGCa- -3'
miRNA:   3'- cGGUUa--ACCGCG---UGCUAG-UGGUUGcc -5'
23447 3' -51.2 NC_005259.1 + 8284 0.67 0.908068
Target:  5'- aCCg---GGUGCGCGggCACCcgcACGGa -3'
miRNA:   3'- cGGuuaaCCGCGUGCuaGUGGu--UGCC- -5'
23447 3' -51.2 NC_005259.1 + 13411 0.67 0.908068
Target:  5'- gGCCuuccUGGC-CGgGGUCGCCGcCGGg -3'
miRNA:   3'- -CGGuua-ACCGcGUgCUAGUGGUuGCC- -5'
23447 3' -51.2 NC_005259.1 + 13734 0.69 0.85292
Target:  5'- uGCCGugaUGGCcCGCGAgauaugccaagaccUCGCCGACGa -3'
miRNA:   3'- -CGGUua-ACCGcGUGCU--------------AGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 13790 0.66 0.947407
Target:  5'- -aCGAgcagUGGUGCGacAUCACCGGCGa -3'
miRNA:   3'- cgGUUa---ACCGCGUgcUAGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 13820 0.68 0.887077
Target:  5'- aCCAcgUGuGCGU--GAUgACCGACGGg -3'
miRNA:   3'- cGGUuaAC-CGCGugCUAgUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 15719 0.74 0.576655
Target:  5'- gGCCAAcaUGGCGCGCGAcaucgauuuccUCGCCGccuACGa -3'
miRNA:   3'- -CGGUUa-ACCGCGUGCU-----------AGUGGU---UGCc -5'
23447 3' -51.2 NC_005259.1 + 16509 0.66 0.937555
Target:  5'- gGCCGAgagcgaGGCGCuGCGAgcgUCGCuCAAgGGu -3'
miRNA:   3'- -CGGUUaa----CCGCG-UGCU---AGUG-GUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 18331 0.67 0.914521
Target:  5'- gGCCGGUgcguucGUGguCGA-CGCCGACGGc -3'
miRNA:   3'- -CGGUUAac----CGCguGCUaGUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 19853 0.68 0.863729
Target:  5'- cGCuCGGUgUGGCGCucgcgcccgccGgGAUCGCCGACGc -3'
miRNA:   3'- -CG-GUUA-ACCGCG-----------UgCUAGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 20676 0.66 0.956174
Target:  5'- cGCCAugaugUGGuCGCACGGcacgCGCuCggUGGu -3'
miRNA:   3'- -CGGUua---ACC-GCGUGCUa---GUG-GuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 22771 0.69 0.830141
Target:  5'- cGCCAA--GGCGCugGucacugugcaggugcUCACCGAgGGu -3'
miRNA:   3'- -CGGUUaaCCGCGugCu--------------AGUGGUUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.