miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23447 3' -51.2 NC_005259.1 + 29960 0.71 0.750909
Target:  5'- gGCUggUggGGCGgGCGGUgACCGuccaACGGa -3'
miRNA:   3'- -CGGuuAa-CCGCgUGCUAgUGGU----UGCC- -5'
23447 3' -51.2 NC_005259.1 + 43784 0.66 0.956174
Target:  5'- cGCCGGgcaUGaGCaGCGCGggCACCGAguccuugcCGGg -3'
miRNA:   3'- -CGGUUa--AC-CG-CGUGCuaGUGGUU--------GCC- -5'
23447 3' -51.2 NC_005259.1 + 64215 0.69 0.852072
Target:  5'- cGCCGGUcGGCaGCcCGGUaucggggucgauaGCCGACGGg -3'
miRNA:   3'- -CGGUUAaCCG-CGuGCUAg------------UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 4511 0.69 0.838195
Target:  5'- cGCCGGgagUGGCGCugcGCGG-CACCc-CGGu -3'
miRNA:   3'- -CGGUUa--ACCGCG---UGCUaGUGGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 66193 0.69 0.838195
Target:  5'- uGCCGGUgcaguacgGGUcagGCGCGGUCgcGCCGACGc -3'
miRNA:   3'- -CGGUUAa-------CCG---CGUGCUAG--UGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 22771 0.69 0.830141
Target:  5'- cGCCAA--GGCGCugGucacugugcaggugcUCACCGAgGGu -3'
miRNA:   3'- -CGGUUaaCCGCGugCu--------------AGUGGUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 65175 0.7 0.8107
Target:  5'- cGCCGGgucaaGGCGCugguCGAUCAgauCCggUGGg -3'
miRNA:   3'- -CGGUUaa---CCGCGu---GCUAGU---GGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 44931 0.7 0.791408
Target:  5'- cGCUGAUcgGGUcCAUGG-CACCAGCGGg -3'
miRNA:   3'- -CGGUUAa-CCGcGUGCUaGUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 43326 0.7 0.791408
Target:  5'- gGCCAccgccUUGGCgauggGCACGAUCACCuuuuCGa -3'
miRNA:   3'- -CGGUu----AACCG-----CGUGCUAGUGGuu--GCc -5'
23447 3' -51.2 NC_005259.1 + 27354 0.7 0.781506
Target:  5'- cGCCGuacugaucgGGCuuggugcccgGCACGGUgACCGGCGGc -3'
miRNA:   3'- -CGGUuaa------CCG----------CGUGCUAgUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 54366 0.71 0.750909
Target:  5'- aCgGAUUGcGCuCGCGAUCACCGAUGa -3'
miRNA:   3'- cGgUUAAC-CGcGUGCUAGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 2110 0.78 0.367103
Target:  5'- gGCCAAUUGGCaCACGcUCGCCGA-GGu -3'
miRNA:   3'- -CGGUUAACCGcGUGCuAGUGGUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 49976 0.71 0.719215
Target:  5'- uGCgcAUUGcGCGCACgGAUCGCguGCGGa -3'
miRNA:   3'- -CGguUAAC-CGCGUG-CUAGUGguUGCC- -5'
23447 3' -51.2 NC_005259.1 + 6692 0.73 0.653787
Target:  5'- uCCAAgagUGGCGCgacACGAUCaACCGGCa- -3'
miRNA:   3'- cGGUUa--ACCGCG---UGCUAG-UGGUUGcc -5'
23447 3' -51.2 NC_005259.1 + 905 0.73 0.639434
Target:  5'- aCCGAggUGGUGCccgGCGAUCACCugcugcugcgcgacAGCGGa -3'
miRNA:   3'- cGGUUa-ACCGCG---UGCUAGUGG--------------UUGCC- -5'
23447 3' -51.2 NC_005259.1 + 40122 0.73 0.6317
Target:  5'- cGCUcguggAAUUGGCGgGCGAgcUCGCCGuCGGu -3'
miRNA:   3'- -CGG-----UUAACCGCgUGCU--AGUGGUuGCC- -5'
23447 3' -51.2 NC_005259.1 + 32330 0.73 0.6317
Target:  5'- cGCCAAUU-GUGCGCGGcCAUCAACGc -3'
miRNA:   3'- -CGGUUAAcCGCGUGCUaGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 50235 0.73 0.609614
Target:  5'- uCCGAgcgcgGGCGCG-GAUCgugGCCAACGGg -3'
miRNA:   3'- cGGUUaa---CCGCGUgCUAG---UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 49066 0.74 0.598596
Target:  5'- cGgCGGUUGGCGCAaggGAUCGCuCGAgGGu -3'
miRNA:   3'- -CgGUUAACCGCGUg--CUAGUG-GUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 2011 0.74 0.587607
Target:  5'- gGCCAucgggUGGCGCACcggCACCucaguGCGGu -3'
miRNA:   3'- -CGGUua---ACCGCGUGcuaGUGGu----UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.