miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23447 3' -51.2 NC_005259.1 + 28931 0.66 0.951925
Target:  5'- aGCCAGaagcaGGCgGCACGAuccugcgccgcaUCGCCGAgguCGGu -3'
miRNA:   3'- -CGGUUaa---CCG-CGUGCU------------AGUGGUU---GCC- -5'
23447 3' -51.2 NC_005259.1 + 16509 0.66 0.937555
Target:  5'- gGCCGAgagcgaGGCGCuGCGAgcgUCGCuCAAgGGu -3'
miRNA:   3'- -CGGUUaa----CCGCG-UGCU---AGUG-GUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 6355 0.66 0.937555
Target:  5'- uGCCGuacGuGCGCACGuuGUCGCCGggcGCGa -3'
miRNA:   3'- -CGGUuaaC-CGCGUGC--UAGUGGU---UGCc -5'
23447 3' -51.2 NC_005259.1 + 47943 0.66 0.956174
Target:  5'- aGCCGAUgacggcGGUGC-CGAUgGCCGccGCGc -3'
miRNA:   3'- -CGGUUAa-----CCGCGuGCUAgUGGU--UGCc -5'
23447 3' -51.2 NC_005259.1 + 20676 0.66 0.956174
Target:  5'- cGCCAugaugUGGuCGCACGGcacgCGCuCggUGGu -3'
miRNA:   3'- -CGGUua---ACC-GCGUGCUa---GUG-GuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 43784 0.66 0.956174
Target:  5'- cGCCGGgcaUGaGCaGCGCGggCACCGAguccuugcCGGg -3'
miRNA:   3'- -CGGUUa--AC-CG-CGUGCuaGUGGUU--------GCC- -5'
23447 3' -51.2 NC_005259.1 + 6433 0.66 0.951925
Target:  5'- cGCCGAUgucGGCaccgucGCGCuGAUCGgCAGCGu -3'
miRNA:   3'- -CGGUUAa--CCG------CGUG-CUAGUgGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 13790 0.66 0.947407
Target:  5'- -aCGAgcagUGGUGCGacAUCACCGGCGa -3'
miRNA:   3'- cgGUUa---ACCGCGUgcUAGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 51662 0.66 0.947407
Target:  5'- uGCCGcgcgGGCGCGuCGggCACgGGCGc -3'
miRNA:   3'- -CGGUuaa-CCGCGU-GCuaGUGgUUGCc -5'
23447 3' -51.2 NC_005259.1 + 48713 0.66 0.951925
Target:  5'- gGCUAucgcacgGGCGCGCGGaaacucguUUACgCAAUGGg -3'
miRNA:   3'- -CGGUuaa----CCGCGUGCU--------AGUG-GUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 55052 0.66 0.942618
Target:  5'- uGCCucggUGGCagucuGCGCGAg-AUCAGCGGc -3'
miRNA:   3'- -CGGuua-ACCG-----CGUGCUagUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 778 0.66 0.942618
Target:  5'- cGCCGAggcGGCugcccucgGUugGGUgGCCAAgGGg -3'
miRNA:   3'- -CGGUUaa-CCG--------CGugCUAgUGGUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 50094 0.66 0.942618
Target:  5'- cGCCGA-UGGUGCGCccgaGGUUGCCcguacgcACGGg -3'
miRNA:   3'- -CGGUUaACCGCGUG----CUAGUGGu------UGCC- -5'
23447 3' -51.2 NC_005259.1 + 8284 0.67 0.908068
Target:  5'- aCCg---GGUGCGCGggCACCcgcACGGa -3'
miRNA:   3'- cGGuuaaCCGCGUGCuaGUGGu--UGCC- -5'
23447 3' -51.2 NC_005259.1 + 63388 0.67 0.914521
Target:  5'- cGCCGA-UGGCcCACGccgACCAAUGGu -3'
miRNA:   3'- -CGGUUaACCGcGUGCuagUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 13411 0.67 0.908068
Target:  5'- gGCCuuccUGGC-CGgGGUCGCCGcCGGg -3'
miRNA:   3'- -CGGuua-ACCGcGUgCUAGUGGUuGCC- -5'
23447 3' -51.2 NC_005259.1 + 38760 0.67 0.914521
Target:  5'- gGCCGGUgaGCuGCGCGAUCAugUCGGCGa -3'
miRNA:   3'- -CGGUUAacCG-CGUGCUAGU--GGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 58388 0.67 0.914521
Target:  5'- uCCGAcgGuGCGCACcagcCACCGGCGGc -3'
miRNA:   3'- cGGUUaaC-CGCGUGcua-GUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 28019 0.67 0.914521
Target:  5'- cGCCGGgguuGCGCGCGuUgGCCAgccACGGc -3'
miRNA:   3'- -CGGUUaac-CGCGUGCuAgUGGU---UGCC- -5'
23447 3' -51.2 NC_005259.1 + 47081 0.67 0.926595
Target:  5'- cGCCGAgacgaugGGCaGCACGAucUCGCCccACGu -3'
miRNA:   3'- -CGGUUaa-----CCG-CGUGCU--AGUGGu-UGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.