miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23447 3' -51.2 NC_005259.1 + 66193 0.69 0.838195
Target:  5'- uGCCGGUgcaguacgGGUcagGCGCGGUCgcGCCGACGc -3'
miRNA:   3'- -CGGUUAa-------CCG---CGUGCUAG--UGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 65175 0.7 0.8107
Target:  5'- cGCCGGgucaaGGCGCugguCGAUCAgauCCggUGGg -3'
miRNA:   3'- -CGGUUaa---CCGCGu---GCUAGU---GGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 64215 0.69 0.852072
Target:  5'- cGCCGGUcGGCaGCcCGGUaucggggucgauaGCCGACGGg -3'
miRNA:   3'- -CGGUUAaCCG-CGuGCUAg------------UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 63388 0.67 0.914521
Target:  5'- cGCCGA-UGGCcCACGccgACCAAUGGu -3'
miRNA:   3'- -CGGUUaACCGcGUGCuagUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 61024 0.67 0.914521
Target:  5'- uCCAcucggUGGCgGCGaGGUCgACCGACGGg -3'
miRNA:   3'- cGGUua---ACCG-CGUgCUAG-UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 58388 0.67 0.914521
Target:  5'- uCCGAcgGuGCGCACcagcCACCGGCGGc -3'
miRNA:   3'- cGGUUaaC-CGCGUGcua-GUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 57285 0.67 0.908068
Target:  5'- aCCGG-UGGCaccucguaguGCACGAcaucgagCACCGGCGGu -3'
miRNA:   3'- cGGUUaACCG----------CGUGCUa------GUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 55052 0.66 0.942618
Target:  5'- uGCCucggUGGCagucuGCGCGAg-AUCAGCGGc -3'
miRNA:   3'- -CGGuua-ACCG-----CGUGCUagUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 54366 0.71 0.750909
Target:  5'- aCgGAUUGcGCuCGCGAUCACCGAUGa -3'
miRNA:   3'- cGgUUAAC-CGcGUGCUAGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 54084 0.67 0.926595
Target:  5'- gGUCGG-UGGCGuCGCGcAUCACCGG-GGu -3'
miRNA:   3'- -CGGUUaACCGC-GUGC-UAGUGGUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 51662 0.66 0.947407
Target:  5'- uGCCGcgcgGGCGCGuCGggCACgGGCGc -3'
miRNA:   3'- -CGGUuaa-CCGCGU-GCuaGUGgUUGCc -5'
23447 3' -51.2 NC_005259.1 + 50235 0.73 0.609614
Target:  5'- uCCGAgcgcgGGCGCG-GAUCgugGCCAACGGg -3'
miRNA:   3'- cGGUUaa---CCGCGUgCUAG---UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 50094 0.66 0.942618
Target:  5'- cGCCGA-UGGUGCGCccgaGGUUGCCcguacgcACGGg -3'
miRNA:   3'- -CGGUUaACCGCGUG----CUAGUGGu------UGCC- -5'
23447 3' -51.2 NC_005259.1 + 49976 0.71 0.719215
Target:  5'- uGCgcAUUGcGCGCACgGAUCGCguGCGGa -3'
miRNA:   3'- -CGguUAAC-CGCGUG-CUAGUGguUGCC- -5'
23447 3' -51.2 NC_005259.1 + 49066 0.74 0.598596
Target:  5'- cGgCGGUUGGCGCAaggGAUCGCuCGAgGGu -3'
miRNA:   3'- -CgGUUAACCGCGUg--CUAGUG-GUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 48713 0.66 0.951925
Target:  5'- gGCUAucgcacgGGCGCGCGGaaacucguUUACgCAAUGGg -3'
miRNA:   3'- -CGGUuaa----CCGCGUGCU--------AGUG-GUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 47943 0.66 0.956174
Target:  5'- aGCCGAUgacggcGGUGC-CGAUgGCCGccGCGc -3'
miRNA:   3'- -CGGUUAa-----CCGCGuGCUAgUGGU--UGCc -5'
23447 3' -51.2 NC_005259.1 + 47148 0.68 0.871764
Target:  5'- gGCCAcaacGuGCGCAgcaGAUCACCGuaGCGGc -3'
miRNA:   3'- -CGGUuaa-C-CGCGUg--CUAGUGGU--UGCC- -5'
23447 3' -51.2 NC_005259.1 + 47081 0.67 0.926595
Target:  5'- cGCCGAgacgaugGGCaGCACGAucUCGCCccACGu -3'
miRNA:   3'- -CGGUUaa-----CCG-CGUGCU--AGUGGu-UGCc -5'
23447 3' -51.2 NC_005259.1 + 44931 0.7 0.791408
Target:  5'- cGCUGAUcgGGUcCAUGG-CACCAGCGGg -3'
miRNA:   3'- -CGGUUAa-CCGcGUGCUaGUGGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.