Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23449 | 3' | -54.2 | NC_005259.1 | + | 46914 | 0.68 | 0.760375 |
Target: 5'- aGCAGUccgcgUGCGcCGcCGAGcUUGCcCGCCg -3' miRNA: 3'- -CGUCA-----ACGC-GCaGCUCcAAUGcGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 56789 | 0.68 | 0.736898 |
Target: 5'- cGCcGUUGC-CGaugaacagaUCGGGGUcgguggccacccauUGCGCGCCu -3' miRNA: 3'- -CGuCAACGcGC---------AGCUCCA--------------AUGCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 10655 | 0.68 | 0.719191 |
Target: 5'- cGCGGUcgaGCGCcUUGAGGaUGgucUGCGCCg -3' miRNA: 3'- -CGUCAa--CGCGcAGCUCCaAU---GCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 58543 | 0.68 | 0.719191 |
Target: 5'- ----cUGCcCGUCGAGGUUACG-GCUc -3' miRNA: 3'- cgucaACGcGCAGCUCCAAUGCgCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 64261 | 0.68 | 0.719191 |
Target: 5'- cGUGG-UGCGCGagcaCGAGuucGCGCGCCa -3' miRNA: 3'- -CGUCaACGCGCa---GCUCcaaUGCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 38846 | 0.69 | 0.698056 |
Target: 5'- uGCuGUaGCGCGuucUCGAuGUUcgACGCGCCc -3' miRNA: 3'- -CGuCAaCGCGC---AGCUcCAA--UGCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 63681 | 0.69 | 0.68739 |
Target: 5'- gGCAccgGCGCGcCGGGGaucUGCGCCu -3' miRNA: 3'- -CGUcaaCGCGCaGCUCCaauGCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 52043 | 0.69 | 0.676673 |
Target: 5'- cGCuGUcGC-CGUCGAGGaucGCGaCGCCg -3' miRNA: 3'- -CGuCAaCGcGCAGCUCCaa-UGC-GCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 44130 | 0.69 | 0.665915 |
Target: 5'- uGUAGcUGUGCGUugagCGAGGUgaACGUGCg -3' miRNA: 3'- -CGUCaACGCGCA----GCUCCAa-UGCGCGg -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 32321 | 0.7 | 0.644318 |
Target: 5'- cGCAGUgcccgccaauugUGCGCGgccaucaacgCGAGGUUGaugacCGCCg -3' miRNA: 3'- -CGUCA------------ACGCGCa---------GCUCCAAUgc---GCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 14854 | 0.7 | 0.633497 |
Target: 5'- aCGGUcGUGCucgCGAGGUU-CGCGCUg -3' miRNA: 3'- cGUCAaCGCGca-GCUCCAAuGCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 13631 | 0.7 | 0.633497 |
Target: 5'- uGCGGgccGCucaaCGUCGAcGGcUACGCGCCc -3' miRNA: 3'- -CGUCaa-CGc---GCAGCU-CCaAUGCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 1885 | 0.7 | 0.629169 |
Target: 5'- aGCAGgccgccgagaucGCGCGagcugcCGAGGaaGCGCGCCg -3' miRNA: 3'- -CGUCaa----------CGCGCa-----GCUCCaaUGCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 412 | 0.71 | 0.568867 |
Target: 5'- aGCAGcgcgUGCcCGUCGAGGaugACGCaCCg -3' miRNA: 3'- -CGUCa---ACGcGCAGCUCCaa-UGCGcGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 32169 | 0.72 | 0.49579 |
Target: 5'- cGUAGUaGCGCGU-GAGcucgcUGCGCGCCu -3' miRNA: 3'- -CGUCAaCGCGCAgCUCca---AUGCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 27999 | 0.73 | 0.455968 |
Target: 5'- uGCGGgugccgggGCGgGgucgcCGGGGUUGCGCGCg -3' miRNA: 3'- -CGUCaa------CGCgCa----GCUCCAAUGCGCGg -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 51667 | 0.73 | 0.446282 |
Target: 5'- cGCGG--GCGCGUCGGGcacggGCGCGCg -3' miRNA: 3'- -CGUCaaCGCGCAGCUCcaa--UGCGCGg -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 27835 | 0.74 | 0.417933 |
Target: 5'- ----cUGCGCGagguaggccgCGAGGUcGCGCGCCg -3' miRNA: 3'- cgucaACGCGCa---------GCUCCAaUGCGCGG- -5' |
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23449 | 3' | -54.2 | NC_005259.1 | + | 45172 | 0.74 | 0.381894 |
Target: 5'- gGCcuuGUUGCGCGcCGAGGUca-GCGCg -3' miRNA: 3'- -CGu--CAACGCGCaGCUCCAaugCGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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