miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23455 5' -58.8 NC_005259.1 + 58838 0.66 0.639202
Target:  5'- uCGCCGCC-CUCGGUcucaccCUCGGGCu-- -3'
miRNA:   3'- -GCGGUGGcGGGCCAaa----GAGCCUGcuc -5'
23455 5' -58.8 NC_005259.1 + 53177 0.66 0.639202
Target:  5'- uCGCCACCGCCgcccgucgCGGUgUCccCGG-CGAu -3'
miRNA:   3'- -GCGGUGGCGG--------GCCAaAGa-GCCuGCUc -5'
23455 5' -58.8 NC_005259.1 + 20489 0.66 0.628738
Target:  5'- uCGaCACCGCCCGGcagCUCaucGGCGAc -3'
miRNA:   3'- -GCgGUGGCGGGCCaaaGAGc--CUGCUc -5'
23455 5' -58.8 NC_005259.1 + 46650 0.66 0.628738
Target:  5'- gGCCACacgGCUgCGGUugaggUUCUCGG-CGAGc -3'
miRNA:   3'- gCGGUGg--CGG-GCCA-----AAGAGCCuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 22997 0.66 0.618276
Target:  5'- aCGCCGCCGaggucaCCGaGgacggCUCGGucauCGAGa -3'
miRNA:   3'- -GCGGUGGCg-----GGC-Caaa--GAGCCu---GCUC- -5'
23455 5' -58.8 NC_005259.1 + 24135 0.66 0.607825
Target:  5'- cCGCCGCCGCCCug---CUCGc-CGAGu -3'
miRNA:   3'- -GCGGUGGCGGGccaaaGAGCcuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 6219 0.66 0.597393
Target:  5'- aGCCGCCGCgCCGacaccGUgaccgUGGGCGAGu -3'
miRNA:   3'- gCGGUGGCG-GGC-----CAaaga-GCCUGCUC- -5'
23455 5' -58.8 NC_005259.1 + 29785 0.66 0.596351
Target:  5'- aGgCACC-CCCGGUgcCUCGGuaccucagucgagACGAGg -3'
miRNA:   3'- gCgGUGGcGGGCCAaaGAGCC-------------UGCUC- -5'
23455 5' -58.8 NC_005259.1 + 17461 0.67 0.586988
Target:  5'- uGCCACCGCCCaccguGGUgacgCcCGGccauGCGGGc -3'
miRNA:   3'- gCGGUGGCGGG-----CCAaa--GaGCC----UGCUC- -5'
23455 5' -58.8 NC_005259.1 + 13652 0.67 0.576617
Target:  5'- gGCUACgCGCCCGGUcUCUacaucGACGGu -3'
miRNA:   3'- gCGGUG-GCGGGCCAaAGAgc---CUGCUc -5'
23455 5' -58.8 NC_005259.1 + 66639 0.67 0.576617
Target:  5'- gGCCACCGCUCGGauugCUgcCGGuCGGc -3'
miRNA:   3'- gCGGUGGCGGGCCaaa-GA--GCCuGCUc -5'
23455 5' -58.8 NC_005259.1 + 32911 0.67 0.556006
Target:  5'- aGCCACCcgGCCCG----CUCGGGCGcGg -3'
miRNA:   3'- gCGGUGG--CGGGCcaaaGAGCCUGCuC- -5'
23455 5' -58.8 NC_005259.1 + 20436 0.67 0.536628
Target:  5'- aCGCCACagugcuccacgacgaGCCgGGguggCUCGGAUGAc -3'
miRNA:   3'- -GCGGUGg--------------CGGgCCaaa-GAGCCUGCUc -5'
23455 5' -58.8 NC_005259.1 + 67890 0.67 0.535614
Target:  5'- uCGCgCAUCGUUCGGcugugggUCUCGG-CGAGg -3'
miRNA:   3'- -GCG-GUGGCGGGCCaa-----AGAGCCuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 63725 0.67 0.535614
Target:  5'- gGCCugCGCagCCGGUagcgacaUCUCGG-CGGGc -3'
miRNA:   3'- gCGGugGCG--GGCCAa------AGAGCCuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 45423 0.68 0.525516
Target:  5'- cCGCCGCCGCugccucguaggCCGGa-UCUCGGuccuugauCGGGg -3'
miRNA:   3'- -GCGGUGGCG-----------GGCCaaAGAGCCu-------GCUC- -5'
23455 5' -58.8 NC_005259.1 + 51412 0.68 0.525516
Target:  5'- uCGCCGaggGgCCGGUUgaggUCUUGGGCGGGc -3'
miRNA:   3'- -GCGGUgg-CgGGCCAA----AGAGCCUGCUC- -5'
23455 5' -58.8 NC_005259.1 + 52962 0.68 0.5225
Target:  5'- cCGCCGCUGCCCGGcugcaUCGGcaagcaugugcauuGCGGc -3'
miRNA:   3'- -GCGGUGGCGGGCCaaag-AGCC--------------UGCUc -5'
23455 5' -58.8 NC_005259.1 + 50751 0.68 0.505543
Target:  5'- aGCCGCCaCgCGGUg--UCGGACGAc -3'
miRNA:   3'- gCGGUGGcGgGCCAaagAGCCUGCUc -5'
23455 5' -58.8 NC_005259.1 + 60153 0.68 0.485903
Target:  5'- gGCCGCCGCCucagCGGccUCaCGGGCGGc -3'
miRNA:   3'- gCGGUGGCGG----GCCaaAGaGCCUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.