miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23455 5' -58.8 NC_005259.1 + 3285 0.72 0.30657
Target:  5'- cCGUCGCCGCcucgCCGGUccCUCGG-CGAGc -3'
miRNA:   3'- -GCGGUGGCG----GGCCAaaGAGCCuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 6219 0.66 0.597393
Target:  5'- aGCCGCCGCgCCGacaccGUgaccgUGGGCGAGu -3'
miRNA:   3'- gCGGUGGCG-GGC-----CAaaga-GCCUGCUC- -5'
23455 5' -58.8 NC_005259.1 + 13098 0.69 0.447767
Target:  5'- uGCCACCGacCCCGGcccgCUCGG-CGGc -3'
miRNA:   3'- gCGGUGGC--GGGCCaaa-GAGCCuGCUc -5'
23455 5' -58.8 NC_005259.1 + 13652 0.67 0.576617
Target:  5'- gGCUACgCGCCCGGUcUCUacaucGACGGu -3'
miRNA:   3'- gCGGUG-GCGGGCCAaAGAgc---CUGCUc -5'
23455 5' -58.8 NC_005259.1 + 14328 0.72 0.278721
Target:  5'- aCGCCGCCGCCCGcGUg---CGGGCc-- -3'
miRNA:   3'- -GCGGUGGCGGGC-CAaagaGCCUGcuc -5'
23455 5' -58.8 NC_005259.1 + 15970 0.69 0.447767
Target:  5'- aGUCGCCGCCCaGU---UCGGuCGAGu -3'
miRNA:   3'- gCGGUGGCGGGcCAaagAGCCuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 17461 0.67 0.586988
Target:  5'- uGCCACCGCCCaccguGGUgacgCcCGGccauGCGGGc -3'
miRNA:   3'- gCGGUGGCGGG-----CCAaa--GaGCC----UGCUC- -5'
23455 5' -58.8 NC_005259.1 + 20167 0.68 0.47622
Target:  5'- gGCCACCgcGCCCGccgcCUCGGcugACGAGa -3'
miRNA:   3'- gCGGUGG--CGGGCcaaaGAGCC---UGCUC- -5'
23455 5' -58.8 NC_005259.1 + 20436 0.67 0.536628
Target:  5'- aCGCCACagugcuccacgacgaGCCgGGguggCUCGGAUGAc -3'
miRNA:   3'- -GCGGUGg--------------CGGgCCaaa-GAGCCUGCUc -5'
23455 5' -58.8 NC_005259.1 + 20489 0.66 0.628738
Target:  5'- uCGaCACCGCCCGGcagCUCaucGGCGAc -3'
miRNA:   3'- -GCgGUGGCGGGCCaaaGAGc--CUGCUc -5'
23455 5' -58.8 NC_005259.1 + 22218 0.72 0.309469
Target:  5'- cCGCgCACCGCCgcgaggcuguCGGUUuccgucgacgcauucUCUgGGACGAGg -3'
miRNA:   3'- -GCG-GUGGCGG----------GCCAA---------------AGAgCCUGCUC- -5'
23455 5' -58.8 NC_005259.1 + 22997 0.66 0.618276
Target:  5'- aCGCCGCCGaggucaCCGaGgacggCUCGGucauCGAGa -3'
miRNA:   3'- -GCGGUGGCg-----GGC-Caaa--GAGCCu---GCUC- -5'
23455 5' -58.8 NC_005259.1 + 24135 0.66 0.607825
Target:  5'- cCGCCGCCGCCCug---CUCGc-CGAGu -3'
miRNA:   3'- -GCGGUGGCGGGccaaaGAGCcuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 26800 0.77 0.153771
Target:  5'- gCGCCGCCGCCCGGUUggccgguaccggCGGugGuGc -3'
miRNA:   3'- -GCGGUGGCGGGCCAAaga---------GCCugCuC- -5'
23455 5' -58.8 NC_005259.1 + 29785 0.66 0.596351
Target:  5'- aGgCACC-CCCGGUgcCUCGGuaccucagucgagACGAGg -3'
miRNA:   3'- gCgGUGGcGGGCCAaaGAGCC-------------UGCUC- -5'
23455 5' -58.8 NC_005259.1 + 29940 0.69 0.447767
Target:  5'- cCGCCACgCgGCCCGGUcgCggcUGGugGGGc -3'
miRNA:   3'- -GCGGUG-G-CGGGCCAaaGa--GCCugCUC- -5'
23455 5' -58.8 NC_005259.1 + 32911 0.67 0.556006
Target:  5'- aGCCACCcgGCCCG----CUCGGGCGcGg -3'
miRNA:   3'- gCGGUGG--CGGGCcaaaGAGCCUGCuC- -5'
23455 5' -58.8 NC_005259.1 + 39901 0.69 0.447767
Target:  5'- uCGCCGCCGCCCGc---CUCGauccguCGAGg -3'
miRNA:   3'- -GCGGUGGCGGGCcaaaGAGCcu----GCUC- -5'
23455 5' -58.8 NC_005259.1 + 44526 0.7 0.411349
Target:  5'- aCGCCGCCGCCCGGcaguccaCUCaugcCGAGa -3'
miRNA:   3'- -GCGGUGGCGGGCCaaa----GAGccu-GCUC- -5'
23455 5' -58.8 NC_005259.1 + 45423 0.68 0.525516
Target:  5'- cCGCCGCCGCugccucguaggCCGGa-UCUCGGuccuugauCGGGg -3'
miRNA:   3'- -GCGGUGGCG-----------GGCCaaAGAGCCu-------GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.