miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23457 5' -53.8 NC_005259.1 + 35670 0.66 0.829361
Target:  5'- aGCGCGGUgguggugcacaGCGACGCcGUgcccGGCGAgGGGu -3'
miRNA:   3'- -CGCGUCA-----------UGUUGCG-CGa---CCGCUgUUU- -5'
23457 5' -53.8 NC_005259.1 + 17186 0.66 0.810748
Target:  5'- gGCGCAGgaaGCcGCGCGUgaGGCGGguAGa -3'
miRNA:   3'- -CGCGUCa--UGuUGCGCGa-CCGCUguUU- -5'
23457 5' -53.8 NC_005259.1 + 30820 0.66 0.810748
Target:  5'- cGgGUAGUcCGGCGCGCcgaGGuCGGCAAc -3'
miRNA:   3'- -CgCGUCAuGUUGCGCGa--CC-GCUGUUu -5'
23457 5' -53.8 NC_005259.1 + 39297 0.66 0.798236
Target:  5'- cGCGUcaucgaAGUGCAcgacgcccgcugucGCGcCGCUGGUGACc-- -3'
miRNA:   3'- -CGCG------UCAUGU--------------UGC-GCGACCGCUGuuu -5'
23457 5' -53.8 NC_005259.1 + 27739 0.66 0.798236
Target:  5'- cGCGCccgcugcugcccacGGUGCAuCGCcCUcGGCGACGAc -3'
miRNA:   3'- -CGCG--------------UCAUGUuGCGcGA-CCGCUGUUu -5'
23457 5' -53.8 NC_005259.1 + 62013 0.67 0.781427
Target:  5'- uGCGguGUACccgcuCGCGCUGuGUGuCGAc -3'
miRNA:   3'- -CGCguCAUGuu---GCGCGAC-CGCuGUUu -5'
23457 5' -53.8 NC_005259.1 + 28312 0.67 0.781427
Target:  5'- uGCGCAGcguagauCggUGUGCcguccuUGGCGGCGAAa -3'
miRNA:   3'- -CGCGUCau-----GuuGCGCG------ACCGCUGUUU- -5'
23457 5' -53.8 NC_005259.1 + 61659 0.67 0.780423
Target:  5'- -aGCu---CAACGCGCUgcccaucGGCGGCAAAa -3'
miRNA:   3'- cgCGucauGUUGCGCGA-------CCGCUGUUU- -5'
23457 5' -53.8 NC_005259.1 + 67950 0.67 0.761074
Target:  5'- uUGCGGUGCGgguugugcuguaGCGCGCgcagcGGCGugGc- -3'
miRNA:   3'- cGCGUCAUGU------------UGCGCGa----CCGCugUuu -5'
23457 5' -53.8 NC_005259.1 + 17593 0.67 0.750689
Target:  5'- cGCGCAaccuCGGCGCGaugacguggGGCGGCGAGg -3'
miRNA:   3'- -CGCGUcau-GUUGCGCga-------CCGCUGUUU- -5'
23457 5' -53.8 NC_005259.1 + 13465 0.67 0.740183
Target:  5'- gGCGCuGGUGCucacCGCGCUGccCGACGAu -3'
miRNA:   3'- -CGCG-UCAUGuu--GCGCGACc-GCUGUUu -5'
23457 5' -53.8 NC_005259.1 + 62847 0.68 0.686222
Target:  5'- cGCGCGGUugacgaGCAGC-CGCUcGGCG-CGAGg -3'
miRNA:   3'- -CGCGUCA------UGUUGcGCGA-CCGCuGUUU- -5'
23457 5' -53.8 NC_005259.1 + 50511 0.69 0.640923
Target:  5'- uGgGCGGUGCGcugcaccucgACGCGCUcgccucgGGCGAgGAAa -3'
miRNA:   3'- -CgCGUCAUGU----------UGCGCGA-------CCGCUgUUU- -5'
23457 5' -53.8 NC_005259.1 + 4509 0.69 0.619839
Target:  5'- cGCGcCGGga-GugGCGCUGcGCGGCAc- -3'
miRNA:   3'- -CGC-GUCaugUugCGCGAC-CGCUGUuu -5'
23457 5' -53.8 NC_005259.1 + 10315 0.69 0.616512
Target:  5'- uCGUAGUcgucaucgggcucgGCGACGgGCUcGGCGGCAGc -3'
miRNA:   3'- cGCGUCA--------------UGUUGCgCGA-CCGCUGUUu -5'
23457 5' -53.8 NC_005259.1 + 66254 0.71 0.553818
Target:  5'- aCGCAGcGCGGCccGCGCcgGGCGGCGGc -3'
miRNA:   3'- cGCGUCaUGUUG--CGCGa-CCGCUGUUu -5'
23457 5' -53.8 NC_005259.1 + 59286 0.72 0.490032
Target:  5'- aGCGguGUGCAgaccuACGCuGUcgUGGCGGCAGc -3'
miRNA:   3'- -CGCguCAUGU-----UGCG-CG--ACCGCUGUUu -5'
23457 5' -53.8 NC_005259.1 + 65781 0.73 0.439609
Target:  5'- uCGCAGUGCGccauggccucgACGCGCUGGuCGAa--- -3'
miRNA:   3'- cGCGUCAUGU-----------UGCGCGACC-GCUguuu -5'
23457 5' -53.8 NC_005259.1 + 39826 0.75 0.331839
Target:  5'- aGCGCA-UugAGCGCGUUGGuCGGCGAc -3'
miRNA:   3'- -CGCGUcAugUUGCGCGACC-GCUGUUu -5'
23457 5' -53.8 NC_005259.1 + 44156 0.75 0.323784
Target:  5'- cGUGCGGUcgaGCAGCGCGCcGGUGuCGGAg -3'
miRNA:   3'- -CGCGUCA---UGUUGCGCGaCCGCuGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.