miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23458 3' -56.7 NC_005259.1 + 23127 0.66 0.685185
Target:  5'- gCUGuccGGCaGCGAUguGaCGUGGUGCg -3'
miRNA:   3'- -GACua-CCGcUGCUAguCcGCGCCACG- -5'
23458 3' -56.7 NC_005259.1 + 58919 0.66 0.685185
Target:  5'- ----cGGCGGucuugucguCGG-CGGGCGCGGUGg -3'
miRNA:   3'- gacuaCCGCU---------GCUaGUCCGCGCCACg -5'
23458 3' -56.7 NC_005259.1 + 20511 0.66 0.695742
Target:  5'- ----cGGCGACGGUgucccgagcaCGGGUGCGcUGCc -3'
miRNA:   3'- gacuaCCGCUGCUA----------GUCCGCGCcACG- -5'
23458 3' -56.7 NC_005259.1 + 46968 0.66 0.695742
Target:  5'- uUGuUGGCcacgccgccGAUGAUCGGGCcGagGGUGCg -3'
miRNA:   3'- gACuACCG---------CUGCUAGUCCG-Cg-CCACG- -5'
23458 3' -56.7 NC_005259.1 + 61030 0.66 0.705194
Target:  5'- -cGGUGGCGGCGAggucgaccgaCGGGCGgcucaccuugugcCGG-GCa -3'
miRNA:   3'- gaCUACCGCUGCUa---------GUCCGC-------------GCCaCG- -5'
23458 3' -56.7 NC_005259.1 + 50143 0.66 0.706241
Target:  5'- -cGAuUGGUuGGCGAUCcGGCGCGuGaGCg -3'
miRNA:   3'- gaCU-ACCG-CUGCUAGuCCGCGC-CaCG- -5'
23458 3' -56.7 NC_005259.1 + 24026 0.66 0.706241
Target:  5'- -gGGcUGGCGAaauggaaccgcCGcaacGUCGucGGCGCGGUGCu -3'
miRNA:   3'- gaCU-ACCGCU-----------GC----UAGU--CCGCGCCACG- -5'
23458 3' -56.7 NC_005259.1 + 56502 0.66 0.716673
Target:  5'- -cGGUGGCGAUGAuucccUCAGGCauUGGUa- -3'
miRNA:   3'- gaCUACCGCUGCU-----AGUCCGc-GCCAcg -5'
23458 3' -56.7 NC_005259.1 + 979 0.66 0.727024
Target:  5'- ----cGGCGACGAgacaccggCAGccGUGUGGUGUa -3'
miRNA:   3'- gacuaCCGCUGCUa-------GUC--CGCGCCACG- -5'
23458 3' -56.7 NC_005259.1 + 27386 0.66 0.727024
Target:  5'- gUGAccGGCGGCGGUgucGGCaGCGGcgGCa -3'
miRNA:   3'- gACUa-CCGCUGCUAgu-CCG-CGCCa-CG- -5'
23458 3' -56.7 NC_005259.1 + 32897 0.65 0.734218
Target:  5'- -cGggGGCGAgggUGAgccacccggcccgcUCGGGCGCGGcgGUa -3'
miRNA:   3'- gaCuaCCGCU---GCU--------------AGUCCGCGCCa-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.