miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23462 3' -57.1 NC_005259.1 + 10746 0.66 0.709858
Target:  5'- cGCGCGcugccGGGCGAucaucaugucgGGCGggUcaucgagguggGCCGCg -3'
miRNA:   3'- uCGCGCca---CUCGCU-----------CCGCuuA-----------UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 35669 0.7 0.431542
Target:  5'- cAGCGCGGUGguggugcacAGCGAcgccgugcccGGCGAGgggUCGCu -3'
miRNA:   3'- -UCGCGCCAC---------UCGCU----------CCGCUUau-GGCG- -5'
23462 3' -57.1 NC_005259.1 + 3097 0.7 0.469755
Target:  5'- cGCaGCGaUGAGCG-GGCGGccAUugCGCg -3'
miRNA:   3'- uCG-CGCcACUCGCuCCGCU--UAugGCG- -5'
23462 3' -57.1 NC_005259.1 + 26525 0.7 0.473671
Target:  5'- gAGCGCGGUGAGCagcuuGGCcaccacgaucucaccGAGgcuguaGCCGCc -3'
miRNA:   3'- -UCGCGCCACUCGcu---CCG---------------CUUa-----UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 42943 0.7 0.473671
Target:  5'- -uCGCcGUGGGCGAGGCcgccguugucgaacgGGAUGCCGg -3'
miRNA:   3'- ucGCGcCACUCGCUCCG---------------CUUAUGGCg -5'
23462 3' -57.1 NC_005259.1 + 45304 0.69 0.489498
Target:  5'- cGCGcCGGUGAcGcCGAGGCc---GCCGCc -3'
miRNA:   3'- uCGC-GCCACU-C-GCUCCGcuuaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 58938 0.69 0.489498
Target:  5'- gGGCGCGGUGgcAGCGucGGCcuugGCCaGCa -3'
miRNA:   3'- -UCGCGCCAC--UCGCu-CCGcuuaUGG-CG- -5'
23462 3' -57.1 NC_005259.1 + 64909 0.69 0.489498
Target:  5'- gAGCGaCGGcGAGCguGAGGaugaCGAGUGCCaGCg -3'
miRNA:   3'- -UCGC-GCCaCUCG--CUCC----GCUUAUGG-CG- -5'
23462 3' -57.1 NC_005259.1 + 66921 0.69 0.492493
Target:  5'- cAGCGCgcggugcucgaccggGGUGAGCGGgacaccGGCGAGcuguuucUugCGCg -3'
miRNA:   3'- -UCGCG---------------CCACUCGCU------CCGCUU-------AugGCG- -5'
23462 3' -57.1 NC_005259.1 + 43948 0.71 0.36929
Target:  5'- cAGCGuCGGcgaUGGGCGGGGCc---GCCGCc -3'
miRNA:   3'- -UCGC-GCC---ACUCGCUCCGcuuaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 27217 0.72 0.360913
Target:  5'- gAGCuCGGUGAGCGGGcCGAA-AUCGCc -3'
miRNA:   3'- -UCGcGCCACUCGCUCcGCUUaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 5557 0.72 0.360913
Target:  5'- cGCGUGGgguGGUGAcGGCGAgaccGUGCCGUg -3'
miRNA:   3'- uCGCGCCac-UCGCU-CCGCU----UAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 6200 0.78 0.137978
Target:  5'- gAGCaGC-GUGAGCGGGGUGAGccGCCGCg -3'
miRNA:   3'- -UCG-CGcCACUCGCUCCGCUUa-UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 45193 0.76 0.189732
Target:  5'- cAGCGCGGUGAuGaCG-GGCGAGU-UCGCg -3'
miRNA:   3'- -UCGCGCCACU-C-GCuCCGCUUAuGGCG- -5'
23462 3' -57.1 NC_005259.1 + 36531 0.76 0.194741
Target:  5'- cGCGCGGUGugacacGCGGGGUGAu--CUGCg -3'
miRNA:   3'- uCGCGCCACu-----CGCUCCGCUuauGGCG- -5'
23462 3' -57.1 NC_005259.1 + 27996 0.75 0.22727
Target:  5'- uGGUGCGGgugccgGGGCGGGGUcgccgGggUugCGCg -3'
miRNA:   3'- -UCGCGCCa-----CUCGCUCCG-----CuuAugGCG- -5'
23462 3' -57.1 NC_005259.1 + 67842 0.74 0.244582
Target:  5'- cAGCcCGGUGAGCGGGuCGAccaaucgGUGCCGUa -3'
miRNA:   3'- -UCGcGCCACUCGCUCcGCU-------UAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 44136 0.74 0.25143
Target:  5'- uGUGCGuUGAGCGAGGUGAacGUGCgGUc -3'
miRNA:   3'- uCGCGCcACUCGCUCCGCU--UAUGgCG- -5'
23462 3' -57.1 NC_005259.1 + 50159 0.74 0.25143
Target:  5'- cGGCGC-GUGAGCGAgcGGUGgAAUGcCCGCa -3'
miRNA:   3'- -UCGCGcCACUCGCU--CCGC-UUAU-GGCG- -5'
23462 3' -57.1 NC_005259.1 + 41655 0.72 0.35595
Target:  5'- gGGCGCucGGUGAGCGGGaucugcaccgcgugcGUGGccACCGCg -3'
miRNA:   3'- -UCGCG--CCACUCGCUC---------------CGCUuaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.