miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23462 3' -57.1 NC_005259.1 + 2037 0.68 0.582402
Target:  5'- cAGUGCGGUGGGCGGucaccGGC----ACCGa -3'
miRNA:   3'- -UCGCGCCACUCGCU-----CCGcuuaUGGCg -5'
23462 3' -57.1 NC_005259.1 + 3097 0.7 0.469755
Target:  5'- cGCaGCGaUGAGCG-GGCGGccAUugCGCg -3'
miRNA:   3'- uCG-CGCcACUCGCuCCGCU--UAugGCG- -5'
23462 3' -57.1 NC_005259.1 + 5491 0.66 0.678298
Target:  5'- uAGCGCc--GAGCGAGGauCGAGcUACgCGCg -3'
miRNA:   3'- -UCGCGccaCUCGCUCC--GCUU-AUG-GCG- -5'
23462 3' -57.1 NC_005259.1 + 5557 0.72 0.360913
Target:  5'- cGCGUGGgguGGUGAcGGCGAgaccGUGCCGUg -3'
miRNA:   3'- uCGCGCCac-UCGCU-CCGCU----UAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 6200 0.78 0.137978
Target:  5'- gAGCaGC-GUGAGCGGGGUGAGccGCCGCg -3'
miRNA:   3'- -UCG-CGcCACUCGCUCCGCUUa-UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 6547 0.68 0.550836
Target:  5'- gGGCgaGCGGUGAagcuguGCGcGGCGugucagGCCGCc -3'
miRNA:   3'- -UCG--CGCCACU------CGCuCCGCuua---UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 9030 0.68 0.561307
Target:  5'- -aCGCGGUGcucgaucauguGCGGGGCGGuaACCGg -3'
miRNA:   3'- ucGCGCCACu----------CGCUCCGCUuaUGGCg -5'
23462 3' -57.1 NC_005259.1 + 10746 0.66 0.709858
Target:  5'- cGCGCGcugccGGGCGAucaucaugucgGGCGggUcaucgagguggGCCGCg -3'
miRNA:   3'- uCGCGCca---CUCGCU-----------CCGCuuA-----------UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 14156 0.66 0.657033
Target:  5'- gAGCGCGucguGUGGaucucGCcGGGCGggUggcaACCGCu -3'
miRNA:   3'- -UCGCGC----CACU-----CGcUCCGCuuA----UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 16307 0.67 0.603654
Target:  5'- cGUGCacguGUGAuGUG-GGCGGAUACUGCc -3'
miRNA:   3'- uCGCGc---CACU-CGCuCCGCUUAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 17603 0.66 0.678298
Target:  5'- cGGCGCGaUGAcGUGGGGCGGcgAggacgguuUCGCa -3'
miRNA:   3'- -UCGCGCcACU-CGCUCCGCUuaU--------GGCG- -5'
23462 3' -57.1 NC_005259.1 + 18780 0.67 0.603654
Target:  5'- -uCGCGGUGggcaAGCGGuGGCagGGAcGCCGCa -3'
miRNA:   3'- ucGCGCCAC----UCGCU-CCG--CUUaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 23587 0.68 0.582402
Target:  5'- -cCGUGGUGAGCGuGGCacggcAGUuccCCGCg -3'
miRNA:   3'- ucGCGCCACUCGCuCCGc----UUAu--GGCG- -5'
23462 3' -57.1 NC_005259.1 + 26525 0.7 0.473671
Target:  5'- gAGCGCGGUGAGCagcuuGGCcaccacgaucucaccGAGgcuguaGCCGCc -3'
miRNA:   3'- -UCGCGCCACUCGcu---CCG---------------CUUa-----UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 27147 0.66 0.699396
Target:  5'- cGGCuGCGGUGu-UGGGGCcaacGAUGCCGUc -3'
miRNA:   3'- -UCG-CGCCACucGCUCCGc---UUAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 27217 0.72 0.360913
Target:  5'- gAGCuCGGUGAGCGGGcCGAA-AUCGCc -3'
miRNA:   3'- -UCGcGCCACUCGCUCcGCUUaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 27462 0.66 0.678298
Target:  5'- cGCGCGGgaaauugGGGcCGGGGuCGGuguggccACCGCc -3'
miRNA:   3'- uCGCGCCa------CUC-GCUCC-GCUua-----UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 27996 0.75 0.22727
Target:  5'- uGGUGCGGgugccgGGGCGGGGUcgccgGggUugCGCg -3'
miRNA:   3'- -UCGCGCCa-----CUCGCUCCG-----CuuAugGCG- -5'
23462 3' -57.1 NC_005259.1 + 29121 0.68 0.571831
Target:  5'- uGC-UGGUGAGCGcGGCGGuAUucgccucgcucACCGCg -3'
miRNA:   3'- uCGcGCCACUCGCuCCGCU-UA-----------UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 29953 0.68 0.550836
Target:  5'- cGGuCGCGGcuGGUGGGGCGGGcggugACCGUc -3'
miRNA:   3'- -UC-GCGCCacUCGCUCCGCUUa----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.