miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23462 3' -57.1 NC_005259.1 + 32339 0.67 0.635682
Target:  5'- uGCGCGGccaucaacGCGAGGUuGAUgACCGCc -3'
miRNA:   3'- uCGCGCCacu-----CGCUCCGcUUA-UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 32878 0.69 0.526993
Target:  5'- cGCGCGGUGAucgauucaccggggGCGAgGGUGAGccacccggcCCGCu -3'
miRNA:   3'- uCGCGCCACU--------------CGCU-CCGCUUau-------GGCG- -5'
23462 3' -57.1 NC_005259.1 + 35183 0.68 0.573942
Target:  5'- uGGCGUgccGGUGAGCagcaccgugccgccuGAGGCGGcgaggaacgugACCGCc -3'
miRNA:   3'- -UCGCG---CCACUCG---------------CUCCGCUua---------UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 35669 0.7 0.431542
Target:  5'- cAGCGCGGUGguggugcacAGCGAcgccgugcccGGCGAGgggUCGCu -3'
miRNA:   3'- -UCGCGCCAC---------UCGCU----------CCGCUUau-GGCG- -5'
23462 3' -57.1 NC_005259.1 + 36531 0.76 0.194741
Target:  5'- cGCGCGGUGugacacGCGGGGUGAu--CUGCg -3'
miRNA:   3'- uCGCGCCACu-----CGCUCCGCUuauGGCG- -5'
23462 3' -57.1 NC_005259.1 + 37760 0.66 0.699396
Target:  5'- cAGCGCGGUGGccccuGCG-GGC-AcgAgCGCa -3'
miRNA:   3'- -UCGCGCCACU-----CGCuCCGcUuaUgGCG- -5'
23462 3' -57.1 NC_005259.1 + 38630 0.66 0.667681
Target:  5'- gAGgGCGGUGAcGcCGAguuGGCGAAcucGCCGa -3'
miRNA:   3'- -UCgCGCCACU-C-GCU---CCGCUUa--UGGCg -5'
23462 3' -57.1 NC_005259.1 + 40095 0.66 0.688873
Target:  5'- gAGCGCGGauucucGAGUc-GGCGAAUG-CGCu -3'
miRNA:   3'- -UCGCGCCa-----CUCGcuCCGCUUAUgGCG- -5'
23462 3' -57.1 NC_005259.1 + 41375 0.67 0.635682
Target:  5'- cGUGCGGUcGAGCuuGGCcGGUACCcaugGCg -3'
miRNA:   3'- uCGCGCCA-CUCGcuCCGcUUAUGG----CG- -5'
23462 3' -57.1 NC_005259.1 + 41603 0.66 0.699396
Target:  5'- cGCGuCGGUGuuucggaucGCGAGGCuGAccaugguggcgGUGCCGg -3'
miRNA:   3'- uCGC-GCCACu--------CGCUCCG-CU-----------UAUGGCg -5'
23462 3' -57.1 NC_005259.1 + 41655 0.72 0.35595
Target:  5'- gGGCGCucGGUGAGCGGGaucugcaccgcgugcGUGGccACCGCg -3'
miRNA:   3'- -UCGCG--CCACUCGCUC---------------CGCUuaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 42943 0.7 0.473671
Target:  5'- -uCGCcGUGGGCGAGGCcgccguugucgaacgGGAUGCCGg -3'
miRNA:   3'- ucGCGcCACUCGCUCCG---------------CUUAUGGCg -5'
23462 3' -57.1 NC_005259.1 + 43712 0.67 0.646364
Target:  5'- cGCGCGaccgcaucGAGuCGAuGGCGGccAUGCCGCc -3'
miRNA:   3'- uCGCGCca------CUC-GCU-CCGCU--UAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 43797 0.67 0.624997
Target:  5'- cAGCGCGGgcaccGAGUccuugccGGGCG--UACCGCc -3'
miRNA:   3'- -UCGCGCCa----CUCGc------UCCGCuuAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 43948 0.71 0.36929
Target:  5'- cAGCGuCGGcgaUGGGCGGGGCc---GCCGCc -3'
miRNA:   3'- -UCGC-GCC---ACUCGCUCCGcuuaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 44136 0.74 0.25143
Target:  5'- uGUGCGuUGAGCGAGGUGAacGUGCgGUc -3'
miRNA:   3'- uCGCGCcACUCGCUCCGCU--UAUGgCG- -5'
23462 3' -57.1 NC_005259.1 + 45193 0.76 0.189732
Target:  5'- cAGCGCGGUGAuGaCG-GGCGAGU-UCGCg -3'
miRNA:   3'- -UCGCGCCACU-C-GCuCCGCUUAuGGCG- -5'
23462 3' -57.1 NC_005259.1 + 45304 0.69 0.489498
Target:  5'- cGCGcCGGUGAcGcCGAGGCc---GCCGCc -3'
miRNA:   3'- uCGC-GCCACU-C-GCUCCGcuuaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 47057 0.87 0.03514
Target:  5'- gAGCGUguuGGUGAGCGAGGCGAGcGCCGa -3'
miRNA:   3'- -UCGCG---CCACUCGCUCCGCUUaUGGCg -5'
23462 3' -57.1 NC_005259.1 + 50159 0.74 0.25143
Target:  5'- cGGCGC-GUGAGCGAgcGGUGgAAUGcCCGCa -3'
miRNA:   3'- -UCGCGcCACUCGCU--CCGC-UUAU-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.