miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23462 3' -57.1 NC_005259.1 + 32878 0.69 0.526993
Target:  5'- cGCGCGGUGAucgauucaccggggGCGAgGGUGAGccacccggcCCGCu -3'
miRNA:   3'- uCGCGCCACU--------------CGCU-CCGCUUau-------GGCG- -5'
23462 3' -57.1 NC_005259.1 + 29953 0.68 0.550836
Target:  5'- cGGuCGCGGcuGGUGGGGCGGGcggugACCGUc -3'
miRNA:   3'- -UC-GCGCCacUCGCUCCGCUUa----UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 6547 0.68 0.550836
Target:  5'- gGGCgaGCGGUGAagcuguGCGcGGCGugucagGCCGCc -3'
miRNA:   3'- -UCG--CGCCACU------CGCuCCGCuua---UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 62847 0.68 0.550836
Target:  5'- cGCGCGGuUGA-CGAGcagccgcucggcGCGAGguagGCCGCu -3'
miRNA:   3'- uCGCGCC-ACUcGCUC------------CGCUUa---UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 56930 0.68 0.561307
Target:  5'- cGCGuCGGUGAGCaugcgguuGGCGA--ACuCGCg -3'
miRNA:   3'- uCGC-GCCACUCGcu------CCGCUuaUG-GCG- -5'
23462 3' -57.1 NC_005259.1 + 9030 0.68 0.561307
Target:  5'- -aCGCGGUGcucgaucauguGCGGGGCGGuaACCGg -3'
miRNA:   3'- ucGCGCCACu----------CGCUCCGCUuaUGGCg -5'
23462 3' -57.1 NC_005259.1 + 29121 0.68 0.571831
Target:  5'- uGC-UGGUGAGCGcGGCGGuAUucgccucgcucACCGCg -3'
miRNA:   3'- uCGcGCCACUCGCuCCGCU-UA-----------UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 35183 0.68 0.573942
Target:  5'- uGGCGUgccGGUGAGCagcaccgugccgccuGAGGCGGcgaggaacgugACCGCc -3'
miRNA:   3'- -UCGCG---CCACUCG---------------CUCCGCUua---------UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 2037 0.68 0.582402
Target:  5'- cAGUGCGGUGGGCGGucaccGGC----ACCGa -3'
miRNA:   3'- -UCGCGCCACUCGCU-----CCGcuuaUGGCg -5'
23462 3' -57.1 NC_005259.1 + 23587 0.68 0.582402
Target:  5'- -cCGUGGUGAGCGuGGCacggcAGUuccCCGCg -3'
miRNA:   3'- ucGCGCCACUCGCuCCGc----UUAu--GGCG- -5'
23462 3' -57.1 NC_005259.1 + 16307 0.67 0.603654
Target:  5'- cGUGCacguGUGAuGUG-GGCGGAUACUGCc -3'
miRNA:   3'- uCGCGc---CACU-CGCuCCGCUUAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 52637 0.67 0.603654
Target:  5'- uGCGuCGGcugugGGGCGAGGUGAGcgACgaGCa -3'
miRNA:   3'- uCGC-GCCa----CUCGCUCCGCUUa-UGg-CG- -5'
23462 3' -57.1 NC_005259.1 + 18780 0.67 0.603654
Target:  5'- -uCGCGGUGggcaAGCGGuGGCagGGAcGCCGCa -3'
miRNA:   3'- ucGCGCCAC----UCGCU-CCG--CUUaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 68128 0.67 0.614318
Target:  5'- gAGCaGCGGcGAGCucGGCaGGAUGCgCGUa -3'
miRNA:   3'- -UCG-CGCCaCUCGcuCCG-CUUAUG-GCG- -5'
23462 3' -57.1 NC_005259.1 + 43797 0.67 0.624997
Target:  5'- cAGCGCGGgcaccGAGUccuugccGGGCG--UACCGCc -3'
miRNA:   3'- -UCGCGCCa----CUCGc------UCCGCuuAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 61943 0.67 0.624997
Target:  5'- cGCGCGG-GuGcCGGGGCc---ACCGCa -3'
miRNA:   3'- uCGCGCCaCuC-GCUCCGcuuaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 66257 0.67 0.624997
Target:  5'- cAGCGCGGcccgcgccGGGCGGcGGCucAcGCCGCc -3'
miRNA:   3'- -UCGCGCCa-------CUCGCU-CCGcuUaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 32339 0.67 0.635682
Target:  5'- uGCGCGGccaucaacGCGAGGUuGAUgACCGCc -3'
miRNA:   3'- uCGCGCCacu-----CGCUCCGcUUA-UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 62694 0.67 0.635682
Target:  5'- gAGUGCGGUGucccauccGGCGAucaGGCGGGggaucUCGCu -3'
miRNA:   3'- -UCGCGCCAC--------UCGCU---CCGCUUau---GGCG- -5'
23462 3' -57.1 NC_005259.1 + 41375 0.67 0.635682
Target:  5'- cGUGCGGUcGAGCuuGGCcGGUACCcaugGCg -3'
miRNA:   3'- uCGCGCCA-CUCGcuCCGcUUAUGG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.