miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23462 3' -57.1 NC_005259.1 + 18780 0.67 0.603654
Target:  5'- -uCGCGGUGggcaAGCGGuGGCagGGAcGCCGCa -3'
miRNA:   3'- ucGCGCCAC----UCGCU-CCG--CUUaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 52637 0.67 0.603654
Target:  5'- uGCGuCGGcugugGGGCGAGGUGAGcgACgaGCa -3'
miRNA:   3'- uCGC-GCCa----CUCGCUCCGCUUa-UGg-CG- -5'
23462 3' -57.1 NC_005259.1 + 23587 0.68 0.582402
Target:  5'- -cCGUGGUGAGCGuGGCacggcAGUuccCCGCg -3'
miRNA:   3'- ucGCGCCACUCGCuCCGc----UUAu--GGCG- -5'
23462 3' -57.1 NC_005259.1 + 2037 0.68 0.582402
Target:  5'- cAGUGCGGUGGGCGGucaccGGC----ACCGa -3'
miRNA:   3'- -UCGCGCCACUCGCU-----CCGcuuaUGGCg -5'
23462 3' -57.1 NC_005259.1 + 35183 0.68 0.573942
Target:  5'- uGGCGUgccGGUGAGCagcaccgugccgccuGAGGCGGcgaggaacgugACCGCc -3'
miRNA:   3'- -UCGCG---CCACUCG---------------CUCCGCUua---------UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 29121 0.68 0.571831
Target:  5'- uGC-UGGUGAGCGcGGCGGuAUucgccucgcucACCGCg -3'
miRNA:   3'- uCGcGCCACUCGCuCCGCU-UA-----------UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 56930 0.68 0.561307
Target:  5'- cGCGuCGGUGAGCaugcgguuGGCGA--ACuCGCg -3'
miRNA:   3'- uCGC-GCCACUCGcu------CCGCUuaUG-GCG- -5'
23462 3' -57.1 NC_005259.1 + 9030 0.68 0.561307
Target:  5'- -aCGCGGUGcucgaucauguGCGGGGCGGuaACCGg -3'
miRNA:   3'- ucGCGCCACu----------CGCUCCGCUuaUGGCg -5'
23462 3' -57.1 NC_005259.1 + 62847 0.68 0.550836
Target:  5'- cGCGCGGuUGA-CGAGcagccgcucggcGCGAGguagGCCGCu -3'
miRNA:   3'- uCGCGCC-ACUcGCUC------------CGCUUa---UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 6547 0.68 0.550836
Target:  5'- gGGCgaGCGGUGAagcuguGCGcGGCGugucagGCCGCc -3'
miRNA:   3'- -UCG--CGCCACU------CGCuCCGCuua---UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 29953 0.68 0.550836
Target:  5'- cGGuCGCGGcuGGUGGGGCGGGcggugACCGUc -3'
miRNA:   3'- -UC-GCGCCacUCGCUCCGCUUa----UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 32878 0.69 0.526993
Target:  5'- cGCGCGGUGAucgauucaccggggGCGAgGGUGAGccacccggcCCGCu -3'
miRNA:   3'- uCGCGCCACU--------------CGCU-CCGCUUau-------GGCG- -5'
23462 3' -57.1 NC_005259.1 + 66921 0.69 0.492493
Target:  5'- cAGCGCgcggugcucgaccggGGUGAGCGGgacaccGGCGAGcuguuucUugCGCg -3'
miRNA:   3'- -UCGCG---------------CCACUCGCU------CCGCUU-------AugGCG- -5'
23462 3' -57.1 NC_005259.1 + 58938 0.69 0.489498
Target:  5'- gGGCGCGGUGgcAGCGucGGCcuugGCCaGCa -3'
miRNA:   3'- -UCGCGCCAC--UCGCu-CCGcuuaUGG-CG- -5'
23462 3' -57.1 NC_005259.1 + 45304 0.69 0.489498
Target:  5'- cGCGcCGGUGAcGcCGAGGCc---GCCGCc -3'
miRNA:   3'- uCGC-GCCACU-C-GCUCCGcuuaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 64909 0.69 0.489498
Target:  5'- gAGCGaCGGcGAGCguGAGGaugaCGAGUGCCaGCg -3'
miRNA:   3'- -UCGC-GCCaCUCG--CUCC----GCUUAUGG-CG- -5'
23462 3' -57.1 NC_005259.1 + 42943 0.7 0.473671
Target:  5'- -uCGCcGUGGGCGAGGCcgccguugucgaacgGGAUGCCGg -3'
miRNA:   3'- ucGCGcCACUCGCUCCG---------------CUUAUGGCg -5'
23462 3' -57.1 NC_005259.1 + 26525 0.7 0.473671
Target:  5'- gAGCGCGGUGAGCagcuuGGCcaccacgaucucaccGAGgcuguaGCCGCc -3'
miRNA:   3'- -UCGCGCCACUCGcu---CCG---------------CUUa-----UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 3097 0.7 0.469755
Target:  5'- cGCaGCGaUGAGCG-GGCGGccAUugCGCg -3'
miRNA:   3'- uCG-CGCcACUCGCuCCGCU--UAugGCG- -5'
23462 3' -57.1 NC_005259.1 + 35669 0.7 0.431542
Target:  5'- cAGCGCGGUGguggugcacAGCGAcgccgugcccGGCGAGgggUCGCu -3'
miRNA:   3'- -UCGCGCCAC---------UCGCU----------CCGCUUau-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.