miRNA display CGI

Results 61 - 67 of 67 are showing below:
Show page: 1 2 3 4

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23463	5'	-61.6	NC_005259.1	+	43177	0.76	0.106679
	Target:  5'- aGcGCgaagUCGGUACCGACCUCGGCGGc- -3' miRNA:   3'- gC-CGg---AGCCGUGGCUGGAGCCGCUac -5'
23463	5'	-61.6	NC_005259.1	+	51449	0.77	0.095659
	Target:  5'- gGGCCUC-GCGCCGAuagagcuuguugcCCUCGGCGAc- -3' miRNA:   3'- gCCGGAGcCGUGGCU-------------GGAGCCGCUac -5'
23463	5'	-61.6	NC_005259.1	+	1251	0.77	0.093389
	Target:  5'- cCGGCCUCGGCAUC-ACCUCGGaucaCGAg- -3' miRNA:   3'- -GCCGGAGCCGUGGcUGGAGCC----GCUac -5'
23463	5'	-61.6	NC_005259.1	+	34023	0.78	0.07951
	Target:  5'- cCGGCCUCGGCGgCGugCgUCGGCGc-- -3' miRNA:   3'- -GCCGGAGCCGUgGCugG-AGCCGCuac -5'
23463	5'	-61.6	NC_005259.1	+	41471	0.78	0.073332
	Target:  5'- gCGGCCcgugacgccgUCGaGCA-CGACCUCGGCGGUGg -3' miRNA:   3'- -GCCGG----------AGC-CGUgGCUGGAGCCGCUAC- -5'
23463	5'	-61.6	NC_005259.1	+	10413	0.79	0.065809
	Target:  5'- aGGcCCUUGaGCACCGuCCUCGGCGAg- -3' miRNA:   3'- gCC-GGAGC-CGUGGCuGGAGCCGCUac -5'
23463	5'	-61.6	NC_005259.1	+	8376	0.88	0.014043
	Target:  5'- gCGGCCUCGGCAUCGgcgagaGCCUCGGCGAg- -3' miRNA:   3'- -GCCGGAGCCGUGGC------UGGAGCCGCUac -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home