miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23463 5' -61.6 NC_005259.1 + 18728 0.69 0.306911
Target:  5'- gGGCCgccCGGCAUCGGuaaguCgUCGGUGGUGc -3'
miRNA:   3'- gCCGGa--GCCGUGGCU-----GgAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 8532 0.69 0.306911
Target:  5'- -aGCCaaUCGGCGauGAgCUCGGCGGUGu -3'
miRNA:   3'- gcCGG--AGCCGUggCUgGAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 67208 0.69 0.299844
Target:  5'- -cGCCgcugUCGGCggggucgauGCCGACCaCGGCGGUGu -3'
miRNA:   3'- gcCGG----AGCCG---------UGGCUGGaGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 46649 0.69 0.299145
Target:  5'- uGGCCacaCGGCugCGGuugagguUCUCGGCGAg- -3'
miRNA:   3'- gCCGGa--GCCGugGCU-------GGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 41104 0.7 0.28609
Target:  5'- gCGGUCggCGGUAUgaCGAUgUCGGCGGUGc -3'
miRNA:   3'- -GCCGGa-GCCGUG--GCUGgAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 10933 0.7 0.279402
Target:  5'- uCGGCgaaCUCGGUGUCGACCUCGuCGGUGu -3'
miRNA:   3'- -GCCG---GAGCCGUGGCUGGAGCcGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 55878 0.7 0.272838
Target:  5'- aGcGCCUC-GCcCCGACCUCGGgGGUc -3'
miRNA:   3'- gC-CGGAGcCGuGGCUGGAGCCgCUAc -5'
23463 5' -61.6 NC_005259.1 + 293 0.7 0.266399
Target:  5'- gCGGCCUC-GCGCUGAUCUcgacCGGgGGUGc -3'
miRNA:   3'- -GCCGGAGcCGUGGCUGGA----GCCgCUAC- -5'
23463 5' -61.6 NC_005259.1 + 58227 0.71 0.247819
Target:  5'- uGGCCUCGaGC-UCGGgCUCGGUGAa- -3'
miRNA:   3'- gCCGGAGC-CGuGGCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 27373 0.71 0.236038
Target:  5'- gGuGCC-CGGCACggUGACCggCGGCGGUGu -3'
miRNA:   3'- gC-CGGaGCCGUG--GCUGGa-GCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 12161 0.71 0.219249
Target:  5'- -cGCCgaCGGCACCGcCCUCGGuCGAa- -3'
miRNA:   3'- gcCGGa-GCCGUGGCuGGAGCC-GCUac -5'
23463 5' -61.6 NC_005259.1 + 24237 0.71 0.219249
Target:  5'- gGGCCgaGGCACgCGAgUUCGGCGAg- -3'
miRNA:   3'- gCCGGagCCGUG-GCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 44757 0.71 0.219249
Target:  5'- aGGCuCUUGaGCACCGAUCccgcaUCGGCGGUc -3'
miRNA:   3'- gCCG-GAGC-CGUGGCUGG-----AGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 10327 0.72 0.203491
Target:  5'- uCGGgCUCGGCGaCGGgCUCGGCGGc- -3'
miRNA:   3'- -GCCgGAGCCGUgGCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 32211 0.72 0.193539
Target:  5'- uGGCCUCaGaCACCGacGCCUCGGCa--- -3'
miRNA:   3'- gCCGGAGcC-GUGGC--UGGAGCCGcuac -5'
23463 5' -61.6 NC_005259.1 + 58740 0.72 0.188724
Target:  5'- uGGCaC-CGGCACCGGCgaagUUCGGCGAa- -3'
miRNA:   3'- gCCG-GaGCCGUGGCUG----GAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 67764 0.73 0.166206
Target:  5'- cCGGCCacCGGcCACCGACCacgCGGUGAc- -3'
miRNA:   3'- -GCCGGa-GCC-GUGGCUGGa--GCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 60145 0.74 0.149958
Target:  5'- gCGGCCUUGGcCGCCG-CCUCaGCGGc- -3'
miRNA:   3'- -GCCGGAGCC-GUGGCuGGAGcCGCUac -5'
23463 5' -61.6 NC_005259.1 + 45743 0.75 0.135167
Target:  5'- aGGCCgc-GCACCG-CCUCGGgGAUGa -3'
miRNA:   3'- gCCGGagcCGUGGCuGGAGCCgCUAC- -5'
23463 5' -61.6 NC_005259.1 + 43316 0.75 0.12173
Target:  5'- uGGCUgcgUUGGcCACCG-CCUUGGCGAUGg -3'
miRNA:   3'- gCCGG---AGCC-GUGGCuGGAGCCGCUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.