miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23463 5' -61.6 NC_005259.1 + 58881 0.67 0.410205
Target:  5'- -cGCCUCGGCAUCGccgucgucaucACCcucgggcucgUCGGCGGUc -3'
miRNA:   3'- gcCGGAGCCGUGGC-----------UGG----------AGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 55020 0.67 0.404983
Target:  5'- gCGGUcguCUCGGCACgGgcugccgaggugcuuGCCUCGGUGGc- -3'
miRNA:   3'- -GCCG---GAGCCGUGgC---------------UGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 45171 0.67 0.401524
Target:  5'- uGGCCUUGuugcGCGCCGAggUCagcgCGGUGAUGa -3'
miRNA:   3'- gCCGGAGC----CGUGGCU--GGa---GCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 28156 0.67 0.392112
Target:  5'- cCGGCCUCGacGCGCUGcCCUugacguaguccggUGGCGAa- -3'
miRNA:   3'- -GCCGGAGC--CGUGGCuGGA-------------GCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 64774 0.68 0.387882
Target:  5'- uGcGCCUCGGCggcccgcugcgacugGCugugugccuCGGCCUCGGCGGc- -3'
miRNA:   3'- gC-CGGAGCCG---------------UG---------GCUGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 47933 0.68 0.384519
Target:  5'- aGGCCcUGGaaGCCGAUgaCGGCGGUGc -3'
miRNA:   3'- gCCGGaGCCg-UGGCUGgaGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 27152 0.68 0.384519
Target:  5'- gCGGUgUUGGgGCCaacgauGCCgUCGGCGAUGa -3'
miRNA:   3'- -GCCGgAGCCgUGGc-----UGG-AGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 24275 0.68 0.367998
Target:  5'- uGGCUggaaGCGCuCGACCUCGG-GAUGg -3'
miRNA:   3'- gCCGGagc-CGUG-GCUGGAGCCgCUAC- -5'
23463 5' -61.6 NC_005259.1 + 2009 0.68 0.367998
Target:  5'- gCGGCCaUCGgguggcGCACCGgcACCUCaGuGCGGUGg -3'
miRNA:   3'- -GCCGG-AGC------CGUGGC--UGGAG-C-CGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 30489 0.68 0.359922
Target:  5'- aGGCCagaccCGGCGa-GACCUUGcGCGAUGu -3'
miRNA:   3'- gCCGGa----GCCGUggCUGGAGC-CGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 63724 0.68 0.359122
Target:  5'- gGGCCUgcgcagcCGGUAgCGACauCUCGGCGGg- -3'
miRNA:   3'- gCCGGA-------GCCGUgGCUG--GAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 42530 0.68 0.351971
Target:  5'- cCGGCCccgaUgGGCACCGagguggcgggcAgCUCGGCGAg- -3'
miRNA:   3'- -GCCGG----AgCCGUGGC-----------UgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 51740 0.68 0.351971
Target:  5'- uGGCCaccgccacgcucUCGGCAgCGuuGCgCUCGGCGAg- -3'
miRNA:   3'- gCCGG------------AGCCGUgGC--UG-GAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 67076 0.68 0.351971
Target:  5'- gGGCCagCGuGaCGCCGACCUUGGCc--- -3'
miRNA:   3'- gCCGGa-GC-C-GUGGCUGGAGCCGcuac -5'
23463 5' -61.6 NC_005259.1 + 42776 0.68 0.336445
Target:  5'- gCGGUCUCGGgGCCGccACCgaucacuguaaUCGGCGcGUGc -3'
miRNA:   3'- -GCCGGAGCCgUGGC--UGG-----------AGCCGC-UAC- -5'
23463 5' -61.6 NC_005259.1 + 67511 0.69 0.328871
Target:  5'- --uUCUCGGCAgCGACCucUCGGCGGc- -3'
miRNA:   3'- gccGGAGCCGUgGCUGG--AGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 13086 0.69 0.328871
Target:  5'- cCGGCCaucCGGUgccACCGACCccggcccgcUCGGCGGc- -3'
miRNA:   3'- -GCCGGa--GCCG---UGGCUGG---------AGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 56261 0.69 0.328871
Target:  5'- gCGGCCUUGaGCGCCGccGCC-CGGCc--- -3'
miRNA:   3'- -GCCGGAGC-CGUGGC--UGGaGCCGcuac -5'
23463 5' -61.6 NC_005259.1 + 4120 0.69 0.328871
Target:  5'- gCGGCCUCGaCgugGCCaaGACCgUCGGCGAg- -3'
miRNA:   3'- -GCCGGAGCcG---UGG--CUGG-AGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 9557 0.69 0.321424
Target:  5'- cCGGCCUCG--ACCG-CgUCGGCGAg- -3'
miRNA:   3'- -GCCGGAGCcgUGGCuGgAGCCGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.