miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23463 5' -61.6 NC_005259.1 + 47933 0.68 0.384519
Target:  5'- aGGCCcUGGaaGCCGAUgaCGGCGGUGc -3'
miRNA:   3'- gCCGGaGCCg-UGGCUGgaGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 47551 0.67 0.410205
Target:  5'- gCGGUCgaauugcguuguUCGcGCGCUGcugucCCUCGGCGGUGu -3'
miRNA:   3'- -GCCGG------------AGC-CGUGGCu----GGAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 46649 0.69 0.299145
Target:  5'- uGGCCacaCGGCugCGGuugagguUCUCGGCGAg- -3'
miRNA:   3'- gCCGGa--GCCGugGCU-------GGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 46061 0.66 0.493216
Target:  5'- uGGCCUUGagcugcucaaGCACCG-CCggGGCGAg- -3'
miRNA:   3'- gCCGGAGC----------CGUGGCuGGagCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 45743 0.75 0.135167
Target:  5'- aGGCCgc-GCACCG-CCUCGGgGAUGa -3'
miRNA:   3'- gCCGGagcCGUGGCuGGAGCCgCUAC- -5'
23463 5' -61.6 NC_005259.1 + 45171 0.67 0.401524
Target:  5'- uGGCCUUGuugcGCGCCGAggUCagcgCGGUGAUGa -3'
miRNA:   3'- gCCGGAGC----CGUGGCU--GGa---GCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 44757 0.71 0.219249
Target:  5'- aGGCuCUUGaGCACCGAUCccgcaUCGGCGGUc -3'
miRNA:   3'- gCCG-GAGC-CGUGGCUGG-----AGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 43316 0.75 0.12173
Target:  5'- uGGCUgcgUUGGcCACCG-CCUUGGCGAUGg -3'
miRNA:   3'- gCCGG---AGCC-GUGGCuGGAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 43177 0.76 0.106679
Target:  5'- aGcGCgaagUCGGUACCGACCUCGGCGGc- -3'
miRNA:   3'- gC-CGg---AGCCGUGGCUGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 42776 0.68 0.336445
Target:  5'- gCGGUCUCGGgGCCGccACCgaucacuguaaUCGGCGcGUGc -3'
miRNA:   3'- -GCCGGAGCCgUGGC--UGG-----------AGCCGC-UAC- -5'
23463 5' -61.6 NC_005259.1 + 42640 0.67 0.43693
Target:  5'- aGGCacCUCGGCcCCGAUgUgGGCGGc- -3'
miRNA:   3'- gCCG--GAGCCGuGGCUGgAgCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 42530 0.68 0.351971
Target:  5'- cCGGCCccgaUgGGCACCGagguggcgggcAgCUCGGCGAg- -3'
miRNA:   3'- -GCCGG----AgCCGUGGC-----------UgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 42479 0.67 0.436023
Target:  5'- aGGCC-CGGCccguagaGCCGugacCCgucCGGCGGUGu -3'
miRNA:   3'- gCCGGaGCCG-------UGGCu---GGa--GCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 41471 0.78 0.073332
Target:  5'- gCGGCCcgugacgccgUCGaGCA-CGACCUCGGCGGUGg -3'
miRNA:   3'- -GCCGG----------AGC-CGUgGCUGGAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 41104 0.7 0.28609
Target:  5'- gCGGUCggCGGUAUgaCGAUgUCGGCGGUGc -3'
miRNA:   3'- -GCCGGa-GCCGUG--GCUGgAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 40080 0.66 0.463691
Target:  5'- gGGCCgaCGcGCACCGAgCgcggauucucgagUCGGCGAa- -3'
miRNA:   3'- gCCGGa-GC-CGUGGCUgG-------------AGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 34023 0.78 0.07951
Target:  5'- cCGGCCUCGGCGgCGugCgUCGGCGc-- -3'
miRNA:   3'- -GCCGGAGCCGUgGCugG-AGCCGCuac -5'
23463 5' -61.6 NC_005259.1 + 33301 0.67 0.42791
Target:  5'- aCGGCUgCGGCucgauCCcGCCgUCGGCGGUc -3'
miRNA:   3'- -GCCGGaGCCGu----GGcUGG-AGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 32211 0.72 0.193539
Target:  5'- uGGCCUCaGaCACCGacGCCUCGGCa--- -3'
miRNA:   3'- gCCGGAGcC-GUGGC--UGGAGCCGcuac -5'
23463 5' -61.6 NC_005259.1 + 30489 0.68 0.359922
Target:  5'- aGGCCagaccCGGCGa-GACCUUGcGCGAUGu -3'
miRNA:   3'- gCCGGa----GCCGUggCUGGAGC-CGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.