miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23463 5' -61.6 NC_005259.1 + 67764 0.73 0.166206
Target:  5'- cCGGCCacCGGcCACCGACCacgCGGUGAc- -3'
miRNA:   3'- -GCCGGa-GCC-GUGGCUGGa--GCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 67511 0.69 0.328871
Target:  5'- --uUCUCGGCAgCGACCucUCGGCGGc- -3'
miRNA:   3'- gccGGAGCCGUgGCUGG--AGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 67208 0.69 0.299844
Target:  5'- -cGCCgcugUCGGCggggucgauGCCGACCaCGGCGGUGu -3'
miRNA:   3'- gcCGG----AGCCG---------UGGCUGGaGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 67076 0.68 0.351971
Target:  5'- gGGCCagCGuGaCGCCGACCUUGGCc--- -3'
miRNA:   3'- gCCGGa-GC-C-GUGGCUGGAGCCGcuac -5'
23463 5' -61.6 NC_005259.1 + 64774 0.68 0.387882
Target:  5'- uGcGCCUCGGCggcccgcugcgacugGCugugugccuCGGCCUCGGCGGc- -3'
miRNA:   3'- gC-CGGAGCCG---------------UG---------GCUGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 63939 0.67 0.418116
Target:  5'- gGGUCUuaccgucCGGCAgCGAgaUCUCGGCGGUc -3'
miRNA:   3'- gCCGGA-------GCCGUgGCU--GGAGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 63724 0.68 0.359122
Target:  5'- gGGCCUgcgcagcCGGUAgCGACauCUCGGCGGg- -3'
miRNA:   3'- gCCGGA-------GCCGUgGCUG--GAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 60145 0.74 0.149958
Target:  5'- gCGGCCUUGGcCGCCG-CCUCaGCGGc- -3'
miRNA:   3'- -GCCGGAGCC-GUGGCuGGAGcCGCUac -5'
23463 5' -61.6 NC_005259.1 + 58881 0.67 0.410205
Target:  5'- -cGCCUCGGCAUCGccgucgucaucACCcucgggcucgUCGGCGGUc -3'
miRNA:   3'- gcCGGAGCCGUGGC-----------UGG----------AGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 58740 0.72 0.188724
Target:  5'- uGGCaC-CGGCACCGGCgaagUUCGGCGAa- -3'
miRNA:   3'- gCCG-GaGCCGUGGCUG----GAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 58227 0.71 0.247819
Target:  5'- uGGCCUCGaGC-UCGGgCUCGGUGAa- -3'
miRNA:   3'- gCCGGAGC-CGuGGCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 57829 0.66 0.468392
Target:  5'- uGGCCagaUCGGCACggaUGACCUCGuggaaccacgacgguGCGAc- -3'
miRNA:   3'- gCCGG---AGCCGUG---GCUGGAGC---------------CGCUac -5'
23463 5' -61.6 NC_005259.1 + 56261 0.69 0.328871
Target:  5'- gCGGCCUUGaGCGCCGccGCC-CGGCc--- -3'
miRNA:   3'- -GCCGGAGC-CGUGGC--UGGaGCCGcuac -5'
23463 5' -61.6 NC_005259.1 + 55878 0.7 0.272838
Target:  5'- aGcGCCUC-GCcCCGACCUCGGgGGUc -3'
miRNA:   3'- gC-CGGAGcCGuGGCUGGAGCCgCUAc -5'
23463 5' -61.6 NC_005259.1 + 55020 0.67 0.404983
Target:  5'- gCGGUcguCUCGGCACgGgcugccgaggugcuuGCCUCGGUGGc- -3'
miRNA:   3'- -GCCG---GAGCCGUGgC---------------UGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 53524 0.66 0.493216
Target:  5'- uGGCCagCGGCACgGG-CUCGGUgcccGGUGu -3'
miRNA:   3'- gCCGGa-GCCGUGgCUgGAGCCG----CUAC- -5'
23463 5' -61.6 NC_005259.1 + 51740 0.68 0.351971
Target:  5'- uGGCCaccgccacgcucUCGGCAgCGuuGCgCUCGGCGAg- -3'
miRNA:   3'- gCCGG------------AGCCGUgGC--UG-GAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 51449 0.77 0.095659
Target:  5'- gGGCCUC-GCGCCGAuagagcuuguugcCCUCGGCGAc- -3'
miRNA:   3'- gCCGGAGcCGUGGCU-------------GGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 49614 0.67 0.428807
Target:  5'- gGGCagcucaucaucgucaUCGGCggcaGCCG-CgUCGGCGAUGg -3'
miRNA:   3'- gCCGg--------------AGCCG----UGGCuGgAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 49035 0.66 0.446059
Target:  5'- cCGGUCgagUCGGCACgGACgaugacgugaUCGGCGGUu -3'
miRNA:   3'- -GCCGG---AGCCGUGgCUGg---------AGCCGCUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.