miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23463 5' -61.6 NC_005259.1 + 293 0.7 0.266399
Target:  5'- gCGGCCUC-GCGCUGAUCUcgacCGGgGGUGc -3'
miRNA:   3'- -GCCGGAGcCGUGGCUGGA----GCCgCUAC- -5'
23463 5' -61.6 NC_005259.1 + 1251 0.77 0.093389
Target:  5'- cCGGCCUCGGCAUC-ACCUCGGaucaCGAg- -3'
miRNA:   3'- -GCCGGAGCCGUGGcUGGAGCC----GCUac -5'
23463 5' -61.6 NC_005259.1 + 2009 0.68 0.367998
Target:  5'- gCGGCCaUCGgguggcGCACCGgcACCUCaGuGCGGUGg -3'
miRNA:   3'- -GCCGG-AGC------CGUGGC--UGGAG-C-CGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 2048 0.67 0.42791
Target:  5'- gCGGUCacCGGCACCGAgaCaCGGCGGUu -3'
miRNA:   3'- -GCCGGa-GCCGUGGCUg-GaGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 4120 0.69 0.328871
Target:  5'- gCGGCCUCGaCgugGCCaaGACCgUCGGCGAg- -3'
miRNA:   3'- -GCCGGAGCcG---UGG--CUGG-AGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 6410 0.66 0.483595
Target:  5'- gGuGCCcugaugUGGC-CCGACCUCGcCGAUGu -3'
miRNA:   3'- gC-CGGa-----GCCGuGGCUGGAGCcGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 7193 0.67 0.42791
Target:  5'- cCGGCCUgCGgacGCACCGGgCUgCGGUGGa- -3'
miRNA:   3'- -GCCGGA-GC---CGUGGCUgGA-GCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 8376 0.88 0.014043
Target:  5'- gCGGCCUCGGCAUCGgcgagaGCCUCGGCGAg- -3'
miRNA:   3'- -GCCGGAGCCGUGGC------UGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 8532 0.69 0.306911
Target:  5'- -aGCCaaUCGGCGauGAgCUCGGCGGUGu -3'
miRNA:   3'- gcCGG--AGCCGUggCUgGAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 9557 0.69 0.321424
Target:  5'- cCGGCCUCG--ACCG-CgUCGGCGAg- -3'
miRNA:   3'- -GCCGGAGCcgUGGCuGgAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 10327 0.72 0.203491
Target:  5'- uCGGgCUCGGCGaCGGgCUCGGCGGc- -3'
miRNA:   3'- -GCCgGAGCCGUgGCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 10413 0.79 0.065809
Target:  5'- aGGcCCUUGaGCACCGuCCUCGGCGAg- -3'
miRNA:   3'- gCC-GGAGC-CGUGGCuGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 10933 0.7 0.279402
Target:  5'- uCGGCgaaCUCGGUGUCGACCUCGuCGGUGu -3'
miRNA:   3'- -GCCG---GAGCCGUGGCUGGAGCcGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 12161 0.71 0.219249
Target:  5'- -cGCCgaCGGCACCGcCCUCGGuCGAa- -3'
miRNA:   3'- gcCGGa-GCCGUGGCuGGAGCC-GCUac -5'
23463 5' -61.6 NC_005259.1 + 12350 0.67 0.419
Target:  5'- -cGCCUCGaaACCGGCCUC-GCGAc- -3'
miRNA:   3'- gcCGGAGCcgUGGCUGGAGcCGCUac -5'
23463 5' -61.6 NC_005259.1 + 13086 0.69 0.328871
Target:  5'- cCGGCCaucCGGUgccACCGACCccggcccgcUCGGCGGc- -3'
miRNA:   3'- -GCCGGa--GCCG---UGGCUGG---------AGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 13226 0.66 0.483595
Target:  5'- gGGCCUcgacCGGcCACCGugagggccgagcACC-CGGCGGUa -3'
miRNA:   3'- gCCGGA----GCC-GUGGC------------UGGaGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 18728 0.69 0.306911
Target:  5'- gGGCCgccCGGCAUCGGuaaguCgUCGGUGGUGc -3'
miRNA:   3'- gCCGGa--GCCGUGGCU-----GgAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 18900 0.67 0.42791
Target:  5'- uCGaCCUCGGCAacgauCUGAUgCUCGGCGAc- -3'
miRNA:   3'- -GCcGGAGCCGU-----GGCUG-GAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 22385 0.67 0.419
Target:  5'- -aGCC-CGGU--CGGCCUCGGCGAc- -3'
miRNA:   3'- gcCGGaGCCGugGCUGGAGCCGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.