miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23463 5' -61.6 NC_005259.1 + 53524 0.66 0.493216
Target:  5'- uGGCCagCGGCACgGG-CUCGGUgcccGGUGu -3'
miRNA:   3'- gCCGGa-GCCGUGgCUgGAGCCG----CUAC- -5'
23463 5' -61.6 NC_005259.1 + 32211 0.72 0.193539
Target:  5'- uGGCCUCaGaCACCGacGCCUCGGCa--- -3'
miRNA:   3'- gCCGGAGcC-GUGGC--UGGAGCCGcuac -5'
23463 5' -61.6 NC_005259.1 + 10327 0.72 0.203491
Target:  5'- uCGGgCUCGGCGaCGGgCUCGGCGGc- -3'
miRNA:   3'- -GCCgGAGCCGUgGCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 44757 0.71 0.219249
Target:  5'- aGGCuCUUGaGCACCGAUCccgcaUCGGCGGUc -3'
miRNA:   3'- gCCG-GAGC-CGUGGCUGG-----AGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 24237 0.71 0.219249
Target:  5'- gGGCCgaGGCACgCGAgUUCGGCGAg- -3'
miRNA:   3'- gCCGGagCCGUG-GCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 12161 0.71 0.219249
Target:  5'- -cGCCgaCGGCACCGcCCUCGGuCGAa- -3'
miRNA:   3'- gcCGGa-GCCGUGGCuGGAGCC-GCUac -5'
23463 5' -61.6 NC_005259.1 + 27373 0.71 0.236038
Target:  5'- gGuGCC-CGGCACggUGACCggCGGCGGUGu -3'
miRNA:   3'- gC-CGGaGCCGUG--GCUGGa-GCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 58227 0.71 0.247819
Target:  5'- uGGCCUCGaGC-UCGGgCUCGGUGAa- -3'
miRNA:   3'- gCCGGAGC-CGuGGCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 293 0.7 0.266399
Target:  5'- gCGGCCUC-GCGCUGAUCUcgacCGGgGGUGc -3'
miRNA:   3'- -GCCGGAGcCGUGGCUGGA----GCCgCUAC- -5'
23463 5' -61.6 NC_005259.1 + 58740 0.72 0.188724
Target:  5'- uGGCaC-CGGCACCGGCgaagUUCGGCGAa- -3'
miRNA:   3'- gCCG-GaGCCGUGGCUG----GAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 67764 0.73 0.166206
Target:  5'- cCGGCCacCGGcCACCGACCacgCGGUGAc- -3'
miRNA:   3'- -GCCGGa-GCC-GUGGCUGGa--GCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 60145 0.74 0.149958
Target:  5'- gCGGCCUUGGcCGCCG-CCUCaGCGGc- -3'
miRNA:   3'- -GCCGGAGCC-GUGGCuGGAGcCGCUac -5'
23463 5' -61.6 NC_005259.1 + 10413 0.79 0.065809
Target:  5'- aGGcCCUUGaGCACCGuCCUCGGCGAg- -3'
miRNA:   3'- gCC-GGAGC-CGUGGCuGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 41471 0.78 0.073332
Target:  5'- gCGGCCcgugacgccgUCGaGCA-CGACCUCGGCGGUGg -3'
miRNA:   3'- -GCCGG----------AGC-CGUgGCUGGAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 34023 0.78 0.07951
Target:  5'- cCGGCCUCGGCGgCGugCgUCGGCGc-- -3'
miRNA:   3'- -GCCGGAGCCGUgGCugG-AGCCGCuac -5'
23463 5' -61.6 NC_005259.1 + 1251 0.77 0.093389
Target:  5'- cCGGCCUCGGCAUC-ACCUCGGaucaCGAg- -3'
miRNA:   3'- -GCCGGAGCCGUGGcUGGAGCC----GCUac -5'
23463 5' -61.6 NC_005259.1 + 51449 0.77 0.095659
Target:  5'- gGGCCUC-GCGCCGAuagagcuuguugcCCUCGGCGAc- -3'
miRNA:   3'- gCCGGAGcCGUGGCU-------------GGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 43177 0.76 0.106679
Target:  5'- aGcGCgaagUCGGUACCGACCUCGGCGGc- -3'
miRNA:   3'- gC-CGg---AGCCGUGGCUGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 43316 0.75 0.12173
Target:  5'- uGGCUgcgUUGGcCACCG-CCUUGGCGAUGg -3'
miRNA:   3'- gCCGG---AGCC-GUGGCuGGAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 45743 0.75 0.135167
Target:  5'- aGGCCgc-GCACCG-CCUCGGgGAUGa -3'
miRNA:   3'- gCCGGagcCGUGGCuGGAGCCgCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.